1 HisKA#1
94-156 aa · 63 aa · 20.2% of protein
Raw token
HisKA:94:0.000000000503:156:63:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AB5271_RS12005
Histidine kinase, Classic
Blautia wexlerae · GCF_040916065
ClassHKTypeClassicLength312 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_040916065#AB5271_RS12005Stable P2CS identifier used across views.
GenomeGCF_040916065Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length312 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage163 / 312 aa (52.2%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa312 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
208-307 aa · 100 aa · 32.1% of protein
Raw token
HATPase_c:208:3.74e-24:307:100:109- Raw architecture: HisKA:94:0.000000000503:156:63:64#HATPase_c:208:3.74e-24:307:100:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_040916065::NZ_JBCPCI010000034.1::G00040
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1645-3229Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_040916065::NZ_JBCPCI010000034.1::G00040Context members
AB5271_RS12000AB5271_RS12005
Partner locus tags
AB5271_RS12000AB5271_RS12005
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_347046007.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAB5271_RS12005Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JBCPCI010000034.1Sequence record reported by the local genomic context database.
Genomic interval2 291-3 229 nt939 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 645-3 229 ntGCF_040916065::NZ_JBCPCI010000034.1::G00040
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_040916065::NZ_JBCPCI010000034.1::G00040Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBCPCI010000034.1All displayed genes belong to this local TCS context.
Neighborhood span1 645-3 229 nt1 585 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 645 nt3 229 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
AB5271_RS12000GCF_040916065#AB5271_RS12000
RROmpR
1 645-2 319 nt · Forward (+)
AB5271_RS12005GCF_040916065#AB5271_RS12005
HKClassicCurrent focus
2 291-3 229 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_016586395#JMF83_RS05160Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2865574
Simplified PFAM architecture for HKOC_2865574
PFAM domain coverage: 166 / 324 aa (51.2%)
1 aa324 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[105-167] | HATPase_c[218-320]
- Domain count: 2
- Matched identifier: HKOC_2865574
- Positioned domains: HisKA 105-167 ; HATPase_c 218-320
Cluster members and taxonomy
Representative gene: GCF_016586395#JMF83_RS05160
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 418 240 · GCF_040916065
AssemblyASM4091606v1 · Scaffoldhaploid
Genome composition3 947 185 bp · 41,5% GCBlautia wexlerae
Signal transduction countsGenes 116 · HK 58 · RR 56CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key