1 HAMP#1
310-379 aa · 70 aa · 11.4% of protein
Raw token
HAMP:310:0.0000000000399:379:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AB5271_RS03440
Histidine kinase, Classic
Blautia wexlerae · GCF_040916065
ClassHKTypeClassicLength614 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_040916065#AB5271_RS03440Stable P2CS identifier used across views.
GenomeGCF_040916065Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length614 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage258 / 614 aa (42.0%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa614 aa
Domain-by-domain annotation3 items
2 His_kinase#2
401-480 aa · 80 aa · 13.0% of protein
Raw token
His_kinase:401:2.3e-23:480:80:803 HATPase_c#3
500-607 aa · 108 aa · 17.6% of protein
Raw token
HATPase_c:500:2.64e-16:607:108:109- Raw architecture: HAMP:310:0.0000000000399:379:70:69#His_kinase:401:2.3e-23:480:80:80#HATPase_c:500:2.64e-16:607:108:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_040916065::NZ_JBCPCI010000006.1::G00016
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span15285-17920Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_040916065::NZ_JBCPCI010000006.1::G00016Context members
AB5271_RS03435AB5271_RS03440
Partner locus tags
AB5271_RS03435AB5271_RS03440
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_025578107.1Primary protein accession used for annex mappings.
UniProt accessionA0A173YIF6Primary UniProt accession resolved in the annex database.
UniProt IDA0A173YIF6_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAB5271_RS03440Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JBCPCI010000006.1Sequence record reported by the local genomic context database.
Genomic interval16 076-17 920 nt1 845 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span15 285-17 920 ntGCF_040916065::NZ_JBCPCI010000006.1::G00016
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_040916065::NZ_JBCPCI010000006.1::G00016Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBCPCI010000006.1All displayed genes belong to this local TCS context.
Neighborhood span15 285-17 920 nt2 636 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
15 285 nt17 920 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
AB5271_RS03435GCF_040916065#AB5271_RS03435
RRunclassified
15 285-16 034 nt · Reverse (-)
AB5271_RS03440GCF_040916065#AB5271_RS03440
HKClassicCurrent focus
16 076-17 920 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000484655#K316_RS0106325Use this link to inspect the representative gene detail.
PFAM architectureHAMP + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0991290
Simplified PFAM architecture for HKOC_0991290
PFAM domain coverage: 237 / 614 aa (38.6%)
1 aa614 aa
HAMPHis_kinaseHATPase_c
- Simplified architecture: HAMP + His_kinase + HATPase_c
- Raw architecture: HAMP[327-378] | His_kinase[401-478] | HATPase_c[500-606]
- Domain count: 3
- Matched identifier: HKOC_0991290
- Positioned domains: HAMP 327-378 ; His_kinase 401-478 ; HATPase_c 500-606
Cluster members and taxonomy
Representative gene: GCF_000484655#K316_RS0106325
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 418 240 · GCF_040916065
AssemblyASM4091606v1 · Scaffoldhaploid
Genome composition3 947 185 bp · 41,5% GCBlautia wexlerae
Signal transduction countsGenes 116 · HK 58 · RR 56CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key