1 Response_reg#1
6-99 aa · 94 aa · 43.7% of protein
Raw token
Response_reg:6:4.68e-26:99:94:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AB5Z63_RS04830
Response regulator OmpR family
Bifidobacterium pseudocatenulatum · GCF_040910805
ClassRRTypeOmpRLength215 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_040910805#AB5Z63_RS04830Stable P2CS identifier used across views.
GenomeGCF_040910805Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length215 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage171 / 215 aa (79.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 Trans_reg_C#2
133-209 aa · 77 aa · 35.8% of protein
Raw token
Trans_reg_C:133:1.78e-28:209:78:77- Raw architecture: Response_reg:6:4.68e-26:99:94:111#Trans_reg_C:133:1.78e-28:209:78:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_040910805::NZ_JBDFZU010000007.1::G00006
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span19345-19992Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_040910805::NZ_JBDFZU010000007.1::G00006Context members
AB5Z63_RS04830
Partner locus tags
AB5Z63_RS04830
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_227572258.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAB5Z63_RS04830Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JBDFZU010000007.1Sequence record reported by the local genomic context database.
Genomic interval19 345-19 992 nt648 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span19 345-19 992 ntGCF_040910805::NZ_JBDFZU010000007.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_040910805::NZ_JBDFZU010000007.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBDFZU010000007.1All displayed genes belong to this local TCS context.
Neighborhood span19 345-19 992 nt648 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
19 345 nt19 992 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
AB5Z63_RS04830GCF_040910805#AB5Z63_RS04830
RROmpRCurrent focus
19 345-19 992 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_020687105#LKE04_RS01945Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1920570
Simplified PFAM architecture for RROC_1920570
PFAM domain coverage: 169 / 215 aa (78.6%)
1 aa215 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-98] | Trans_reg_C[133-208]
- Domain count: 2
- Matched identifier: RROC_1920570
- Positioned domains: Response_reg 6-98 ; Trans_reg_C 133-208
Cluster members and taxonomy
Representative gene: GCF_020687105#LKE04_RS01945
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 28 026 · GCF_040910805
AssemblyASM4091080v1 · Scaffoldhaploid
Genome composition2 403 751 bp · 56,5% GCBifidobacterium pseudocatenulatum
Signal transduction countsGenes 29 · HK 12 · RR 15CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key