1 Response_reg#1
13-122 aa · 110 aa · 45.1% of protein
Raw token
Response_reg:13:4.22e-36:122:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AB5Z43_RS00370
Response regulator OmpR family
Bifidobacterium pseudocatenulatum · GCF_040910785
ClassRRTypeOmpRLength244 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_040910785#AB5Z43_RS00370Stable P2CS identifier used across views.
GenomeGCF_040910785Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length244 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 244 aa (76.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 Trans_reg_C#2
163-239 aa · 77 aa · 31.6% of protein
Raw token
Trans_reg_C:163:2.56e-33:239:77:77- Raw architecture: Response_reg:13:4.22e-36:122:111:111#Trans_reg_C:163:2.56e-33:239:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_040910785::NZ_JBDFZY010000001.1::G00002
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span90772-93190Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_040910785::NZ_JBDFZY010000001.1::G00002Context members
AB5Z43_RS00365AB5Z43_RS00370
Partner locus tags
AB5Z43_RS00365AB5Z43_RS00370
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_138266547.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAB5Z43_RS00370Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JBDFZY010000001.1Sequence record reported by the local genomic context database.
Genomic interval92 456-93 190 nt735 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span90 772-93 190 ntGCF_040910785::NZ_JBDFZY010000001.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_040910785::NZ_JBDFZY010000001.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBDFZY010000001.1All displayed genes belong to this local TCS context.
Neighborhood span90 772-93 190 nt2 419 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
90 772 nt93 190 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
AB5Z43_RS00365GCF_040910785#AB5Z43_RS00365
HKClassic
90 772-92 448 nt · Reverse (-)
AB5Z43_RS00370GCF_040910785#AB5Z43_RS00370
RROmpRCurrent focus
92 456-93 190 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_005844335#FGQ57_RS02260Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0811776
Simplified PFAM architecture for RROC_0811776
PFAM domain coverage: 185 / 244 aa (75.8%)
1 aa244 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[13-122] | Trans_reg_C[165-239]
- Domain count: 2
- Matched identifier: RROC_0811776
- Positioned domains: Response_reg 13-122 ; Response_reg 13-122 ; Trans_reg_C 165-239 ; Trans_reg_C 165-239
Cluster members and taxonomy
Representative gene: GCF_005844335#FGQ57_RS02260
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 28 026 · GCF_040910785
AssemblyASM4091078v1 · Scaffoldhaploid
Genome composition2 316 993 bp · 56,5% GCBifidobacterium pseudocatenulatum
Signal transduction countsGenes 27 · HK 11 · RR 14CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key