1 HAMP#1
288-357 aa · 70 aa · 11.7% of protein
Raw token
HAMP:288:0.000000744:357:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AB5Z44_RS07420
Histidine kinase, Classic
Agathobacter rectalis · GCF_040909645
ClassHKTypeClassicLength597 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_040909645#AB5Z44_RS07420Stable P2CS identifier used across views.
GenomeGCF_040909645Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length597 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage262 / 597 aa (43.9%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa597 aa
Domain-by-domain annotation3 items
2 His_kinase#2
372-448 aa · 77 aa · 12.9% of protein
Raw token
His_kinase:372:2.08e-25:448:77:803 HATPase_c#3
463-577 aa · 115 aa · 19.3% of protein
Raw token
HATPase_c:463:0.00000000000000261:577:115:109- Raw architecture: HAMP:288:0.000000744:357:70:69#His_kinase:372:2.08e-25:448:77:80#HATPase_c:463:0.00000000000000261:577:115:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_040909645::NZ_JBDGCD010000011.1::G00028
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span85072-87872Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_040909645::NZ_JBDGCD010000011.1::G00028Context members
AB5Z44_RS07420AB5Z44_RS07425
Partner locus tags
AB5Z44_RS07420AB5Z44_RS07425
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055236772.1Primary protein accession used for annex mappings.
UniProt accessionA0A173R2L2Primary UniProt accession resolved in the annex database.
UniProt IDA0A173R2L2_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAB5Z44_RS07420Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JBDGCD010000011.1Sequence record reported by the local genomic context database.
Genomic interval85 072-86 865 nt1 794 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span85 072-87 872 ntGCF_040909645::NZ_JBDGCD010000011.1::G00028
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_040909645::NZ_JBDGCD010000011.1::G00028Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBDGCD010000011.1All displayed genes belong to this local TCS context.
Neighborhood span85 072-87 872 nt2 801 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
85 072 nt87 872 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
AB5Z44_RS07420GCF_040909645#AB5Z44_RS07420
HKClassicCurrent focus
85 072-86 865 nt · Forward (+)
AB5Z44_RS07425GCF_040909645#AB5Z44_RS07425
RRunclassified
86 862-87 872 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001406375#ARA17_RS00980Use this link to inspect the representative gene detail.
PFAM architectureHis_kinase + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1069126
Simplified PFAM architecture for HKOC_1069126
PFAM domain coverage: 188 / 597 aa (31.5%)
1 aa597 aa
His_kinaseHATPase_c
- Simplified architecture: His_kinase + HATPase_c
- Raw architecture: His_kinase[373-448] | HATPase_c[465-576]
- Domain count: 2
- Matched identifier: HKOC_1069126
- Positioned domains: His_kinase 373-448 ; HATPase_c 465-576
Cluster members and taxonomy
Representative gene: GCF_001406375#ARA17_RS00980
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 491 · GCF_040909645
AssemblyASM4090964v1 · Scaffoldhaploid
Genome composition3 513 043 bp · 41,5% GCAgathobacter rectalis
Signal transduction countsGenes 102 · HK 47 · RR 54CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key