1 Response_reg#1
4-95 aa · 92 aa · 35.9% of protein
Raw token
Response_reg:4:5.6e-20:95:92:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AB5Z44_RS05730
Response regulator, FrzZ family
Agathobacter rectalis · GCF_040909645
ClassRRTypeFrzZLength256 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_040909645#AB5Z44_RS05730Stable P2CS identifier used across views.
GenomeGCF_040909645Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length256 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage203 / 256 aa (79.3%)Merged over positioned domains only.
Domain description2 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa256 aa
Domain-by-domain annotation2 items
2 Response_reg#2
141-251 aa · 111 aa · 43.4% of protein
Raw token
Response_reg:141:0.0000000222:251:111:111- Raw architecture: Response_reg:4:5.6e-20:95:92:111#Response_reg:141:0.0000000222:251:111:111
- Domain description: 2 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_040909645::NZ_JBDGCD010000008.1::G00021
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span121485-122255Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_040909645::NZ_JBDGCD010000008.1::G00021Context members
AB5Z44_RS05730
Partner locus tags
AB5Z44_RS05730
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_129899196.1Primary protein accession used for annex mappings.
UniProt accessionA0A844E2T5Primary UniProt accession resolved in the annex database.
UniProt IDA0A844E2T5_EUBRADisplay identifier provided by UniProt.
GO / PubMed1 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAB5Z44_RS05730Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JBDGCD010000008.1Sequence record reported by the local genomic context database.
Genomic interval121 485-122 255 nt771 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span121 485-122 255 ntGCF_040909645::NZ_JBDGCD010000008.1::G00021
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_040909645::NZ_JBDGCD010000008.1::G00021Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBDGCD010000008.1All displayed genes belong to this local TCS context.
Neighborhood span121 485-122 255 nt771 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
121 485 nt122 255 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
AB5Z44_RS05730GCF_040909645#AB5Z44_RS05730
RRFrzZCurrent focus
121 485-122 255 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_004167445#EAI88_RS01740Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Response_reg2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0674970
Simplified PFAM architecture for RROC_0674970
PFAM domain coverage: 210 / 256 aa (82.0%)
1 aa256 aa
Response_regResponse_reg
- Simplified architecture: Response_reg + Response_reg
- Raw architecture: Response_reg[4-102] | Response_reg[141-251]
- Domain count: 2
- Matched identifier: RROC_0674970
- Positioned domains: Response_reg 4-102 ; Response_reg 4-102 ; Response_reg 141-251 ; Response_reg 141-251
Cluster members and taxonomy
Representative gene: GCF_004167445#EAI88_RS01740
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 491 · GCF_040909645
AssemblyASM4090964v1 · Scaffoldhaploid
Genome composition3 513 043 bp · 41,5% GCAgathobacter rectalis
Signal transduction countsGenes 102 · HK 47 · RR 54CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key