1 HisKA#1
203-263 aa · 61 aa · 14.6% of protein
Raw token
HisKA:203:0.0000000261:263:63:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AB5Z44_RS05705
Histidine kinase, Classic
Agathobacter rectalis · GCF_040909645
ClassHKTypeClassicLength419 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_040909645#AB5Z44_RS05705Stable P2CS identifier used across views.
GenomeGCF_040909645Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length419 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage164 / 419 aa (39.1%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa419 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
316-418 aa · 103 aa · 24.6% of protein
Raw token
HATPase_c:316:1.3e-24:418:103:109- Raw architecture: HisKA:203:0.0000000261:263:63:64#HATPase_c:316:1.3e-24:418:103:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_040909645::NZ_JBDGCD010000008.1::G00020
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span114540-116485Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_040909645::NZ_JBDGCD010000008.1::G00020Context members
AB5Z44_RS05700AB5Z44_RS05705
Partner locus tags
AB5Z44_RS05700AB5Z44_RS05705
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_154314556.1Primary protein accession used for annex mappings.
UniProt accessionA0A844E035Primary UniProt accession resolved in the annex database.
UniProt IDA0A844E035_EUBRADisplay identifier provided by UniProt.
GO / PubMed4 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAB5Z44_RS05705Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JBDGCD010000008.1Sequence record reported by the local genomic context database.
Genomic interval115 226-116 485 nt1 260 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span114 540-116 485 ntGCF_040909645::NZ_JBDGCD010000008.1::G00020
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_040909645::NZ_JBDGCD010000008.1::G00020Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBDGCD010000008.1All displayed genes belong to this local TCS context.
Neighborhood span114 540-116 485 nt1 946 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
114 540 nt116 485 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
AB5Z44_RS05700GCF_040909645#AB5Z44_RS05700
RROmpR
114 540-115 229 nt · Forward (+)
AB5Z44_RS05705GCF_040909645#AB5Z44_RS05705
HKClassicCurrent focus
115 226-116 485 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_009680405#GKE72_RS07420Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2278301
Simplified PFAM architecture for HKOC_2278301
PFAM domain coverage: 165 / 419 aa (39.4%)
1 aa419 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[202-263] | HATPase_c[315-417]
- Domain count: 2
- Matched identifier: HKOC_2278301
- Positioned domains: HisKA 202-263 ; HATPase_c 315-417
Cluster members and taxonomy
Representative gene: GCF_009680405#GKE72_RS07420
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 491 · GCF_040909645
AssemblyASM4090964v1 · Scaffoldhaploid
Genome composition3 513 043 bp · 41,5% GCAgathobacter rectalis
Signal transduction countsGenes 102 · HK 47 · RR 54CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key