1 Response_reg#1
4-112 aa · 109 aa · 47.6% of protein
Raw token
Response_reg:4:6.4e-30:112:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AB5Z44_RS05700
Response regulator OmpR family
Agathobacter rectalis · GCF_040909645
ClassRRTypeOmpRLength229 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_040909645#AB5Z44_RS05700Stable P2CS identifier used across views.
GenomeGCF_040909645Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length229 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 229 aa (81.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa229 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
145-222 aa · 78 aa · 34.1% of protein
Raw token
Trans_reg_C:145:4.73e-29:222:78:77- Raw architecture: Response_reg:4:6.4e-30:112:110:111#Trans_reg_C:145:4.73e-29:222:78:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_040909645::NZ_JBDGCD010000008.1::G00020
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span114540-116485Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_040909645::NZ_JBDGCD010000008.1::G00020Context members
AB5Z44_RS05700AB5Z44_RS05705
Partner locus tags
AB5Z44_RS05700AB5Z44_RS05705
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_155203980.1Primary protein accession used for annex mappings.
UniProt accessionA0AAX0BDR8Primary UniProt accession resolved in the annex database.
UniProt IDA0AAX0BDR8_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAB5Z44_RS05700Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JBDGCD010000008.1Sequence record reported by the local genomic context database.
Genomic interval114 540-115 229 nt690 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span114 540-116 485 ntGCF_040909645::NZ_JBDGCD010000008.1::G00020
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_040909645::NZ_JBDGCD010000008.1::G00020Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBDGCD010000008.1All displayed genes belong to this local TCS context.
Neighborhood span114 540-116 485 nt1 946 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
114 540 nt116 485 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
AB5Z44_RS05700GCF_040909645#AB5Z44_RS05700
RROmpRCurrent focus
114 540-115 229 nt · Forward (+)
AB5Z44_RS05705GCF_040909645#AB5Z44_RS05705
HKClassic
115 226-116 485 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_009718305#GMD21_RS06405Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1266040
Simplified PFAM architecture for RROC_1266040
PFAM domain coverage: 185 / 229 aa (80.8%)
1 aa229 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-112] | Trans_reg_C[146-221]
- Domain count: 2
- Matched identifier: RROC_1266040
- Positioned domains: Response_reg 4-112 ; Response_reg 4-112 ; Trans_reg_C 146-221 ; Trans_reg_C 146-221
Cluster members and taxonomy
Representative gene: GCF_009718305#GMD21_RS06405
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 491 · GCF_040909645
AssemblyASM4090964v1 · Scaffoldhaploid
Genome composition3 513 043 bp · 41,5% GCAgathobacter rectalis
Signal transduction countsGenes 102 · HK 47 · RR 54CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key