1 Response_reg#1
9-117 aa · 109 aa · 46.4% of protein
Raw token
Response_reg:9:3.25e-29:117:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AB5Z44_RS05485
Response regulator OmpR family
Agathobacter rectalis · GCF_040909645
ClassRRTypeOmpRLength235 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_040909645#AB5Z44_RS05485Stable P2CS identifier used across views.
GenomeGCF_040909645Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length235 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage186 / 235 aa (79.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa235 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
152-228 aa · 77 aa · 32.8% of protein
Raw token
Trans_reg_C:152:3.08e-23:228:77:77- Raw architecture: Response_reg:9:3.25e-29:117:111:111#Trans_reg_C:152:3.08e-23:228:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_040909645::NZ_JBDGCD010000008.1::G00019
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span72636-74715Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_040909645::NZ_JBDGCD010000008.1::G00019Context members
AB5Z44_RS05480AB5Z44_RS05485
Partner locus tags
AB5Z44_RS05480AB5Z44_RS05485
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_087150669.1Primary protein accession used for annex mappings.
UniProt accessionA0A6N3G3F6Primary UniProt accession resolved in the annex database.
UniProt IDA0A6N3G3F6_CLOSYDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAB5Z44_RS05485Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JBDGCD010000008.1Sequence record reported by the local genomic context database.
Genomic interval74 008-74 715 nt708 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span72 636-74 715 ntGCF_040909645::NZ_JBDGCD010000008.1::G00019
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_040909645::NZ_JBDGCD010000008.1::G00019Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBDGCD010000008.1All displayed genes belong to this local TCS context.
Neighborhood span72 636-74 715 nt2 080 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
72 636 nt74 715 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
AB5Z44_RS05480GCF_040909645#AB5Z44_RS05480
HKClassic
72 636-74 003 nt · Reverse (-)
AB5Z44_RS05485GCF_040909645#AB5Z44_RS05485
RROmpRCurrent focus
74 008-74 715 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_015550485#I2A60_RS01855Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1029723
Simplified PFAM architecture for RROC_1029723
PFAM domain coverage: 183 / 235 aa (77.9%)
1 aa235 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[9-115] | Trans_reg_C[153-228]
- Domain count: 2
- Matched identifier: RROC_1029723
- Positioned domains: Response_reg 9-115 ; Trans_reg_C 153-228
Cluster members and taxonomy
Representative gene: GCF_015550485#I2A60_RS01855
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 491 · GCF_040909645
AssemblyASM4090964v1 · Scaffoldhaploid
Genome composition3 513 043 bp · 41,5% GCAgathobacter rectalis
Signal transduction countsGenes 102 · HK 47 · RR 54CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key