1 HAMP#1
160-226 aa · 67 aa · 14.7% of protein
Raw token
HAMP:160:0.0000508:226:69:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AB5Z44_RS05480
Histidine kinase, Classic
Agathobacter rectalis · GCF_040909645
ClassHKTypeClassicLength455 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_040909645#AB5Z44_RS05480Stable P2CS identifier used across views.
GenomeGCF_040909645Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length455 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage241 / 455 aa (53.0%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa455 aa
Domain-by-domain annotation3 items
2 HisKA#2
230-294 aa · 65 aa · 14.3% of protein
Raw token
HisKA:230:0.000000000000377:294:65:643 HATPase_c#3
344-452 aa · 109 aa · 24.0% of protein
Raw token
HATPase_c:344:8.49e-23:452:109:109- Raw architecture: HAMP:160:0.0000508:226:69:69#HisKA:230:0.000000000000377:294:65:64#HATPase_c:344:8.49e-23:452:109:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_040909645::NZ_JBDGCD010000008.1::G00019
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span72636-74715Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_040909645::NZ_JBDGCD010000008.1::G00019Context members
AB5Z44_RS05480AB5Z44_RS05485
Partner locus tags
AB5Z44_RS05480AB5Z44_RS05485
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_156684772.1Primary protein accession used for annex mappings.
UniProt accessionA0A6N3G171Primary UniProt accession resolved in the annex database.
UniProt IDA0A6N3G171_CLOSYDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAB5Z44_RS05480Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JBDGCD010000008.1Sequence record reported by the local genomic context database.
Genomic interval72 636-74 003 nt1 368 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span72 636-74 715 ntGCF_040909645::NZ_JBDGCD010000008.1::G00019
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_040909645::NZ_JBDGCD010000008.1::G00019Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBDGCD010000008.1All displayed genes belong to this local TCS context.
Neighborhood span72 636-74 715 nt2 080 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
72 636 nt74 715 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
AB5Z44_RS05480GCF_040909645#AB5Z44_RS05480
HKClassicCurrent focus
72 636-74 003 nt · Reverse (-)
AB5Z44_RS05485GCF_040909645#AB5Z44_RS05485
RROmpR
74 008-74 715 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_040909645#AB5Z44_RS05480The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1909527
Simplified PFAM architecture for HKOC_1909527
PFAM domain coverage: 173 / 455 aa (38.0%)
1 aa455 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[231-294] | HATPase_c[344-452]
- Domain count: 2
- Matched identifier: HKOC_1909527
- Positioned domains: HisKA 231-294 ; HATPase_c 344-452
Cluster members and taxonomy
Representative gene: GCF_040909645#AB5Z44_RS05480
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 491 · GCF_040909645
AssemblyASM4090964v1 · Scaffoldhaploid
Genome composition3 513 043 bp · 41,5% GCAgathobacter rectalis
Signal transduction countsGenes 102 · HK 47 · RR 54CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key