1 HAMP#1
89-159 aa · 71 aa · 18.4% of protein
Raw token
HAMP:89:0.000000000243:159:71:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AB5Z44_RS03700
Histidine kinase, Classic
Agathobacter rectalis · GCF_040909645
ClassHKTypeClassicLength385 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_040909645#AB5Z44_RS03700Stable P2CS identifier used across views.
GenomeGCF_040909645Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length385 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage247 / 385 aa (64.2%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa385 aa
Domain-by-domain annotation3 items
2 HisKA#2
164-230 aa · 67 aa · 17.4% of protein
Raw token
HisKA:164:0.000000000275:230:67:643 HATPase_c#3
272-380 aa · 109 aa · 28.3% of protein
Raw token
HATPase_c:272:6.49e-32:380:109:109- Raw architecture: HAMP:89:0.000000000243:159:71:69#HisKA:164:0.000000000275:230:67:64#HATPase_c:272:6.49e-32:380:109:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_040909645::NZ_JBDGCD010000005.1::G00013
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span130861-132695Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_040909645::NZ_JBDGCD010000005.1::G00013Context members
AB5Z44_RS03700AB5Z44_RS03705
Partner locus tags
AB5Z44_RS03700AB5Z44_RS03705
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055237545.1Primary protein accession used for annex mappings.
UniProt accessionA0A173S646Primary UniProt accession resolved in the annex database.
UniProt IDA0A173S646_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAB5Z44_RS03700Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JBDGCD010000005.1Sequence record reported by the local genomic context database.
Genomic interval130 861-132 018 nt1 158 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span130 861-132 695 ntGCF_040909645::NZ_JBDGCD010000005.1::G00013
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_040909645::NZ_JBDGCD010000005.1::G00013Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBDGCD010000005.1All displayed genes belong to this local TCS context.
Neighborhood span130 861-132 695 nt1 835 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
130 861 nt132 695 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
AB5Z44_RS03700GCF_040909645#AB5Z44_RS03700
HKClassicCurrent focus
130 861-132 018 nt · Reverse (-)
AB5Z44_RS03705GCF_040909645#AB5Z44_RS03705
RROmpR
132 015-132 695 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001406375#ARA17_RS04225Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2565683
Simplified PFAM architecture for HKOC_2565683
PFAM domain coverage: 227 / 385 aa (59.0%)
1 aa385 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[106-158] | HisKA[164-230] | HATPase_c[275-381]
- Domain count: 3
- Matched identifier: HKOC_2565683
- Positioned domains: HAMP 106-158 ; HisKA 164-230 ; HATPase_c 275-381
Cluster members and taxonomy
Representative gene: GCF_001406375#ARA17_RS04225
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 491 · GCF_040909645
AssemblyASM4090964v1 · Scaffoldhaploid
Genome composition3 513 043 bp · 41,5% GCAgathobacter rectalis
Signal transduction countsGenes 102 · HK 47 · RR 54CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key