1 Hpt#1
5-98 aa · 94 aa · 13.3% of protein
Raw token
Hpt:5:2.17e-17:98:94:84P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AB5Z19_RS01035
Histidine kinase, CheA
Agathobacter rectalis · GCF_040909605
ClassHKTypeCheALength706 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_040909605#AB5Z19_RS01035Stable P2CS identifier used across views.
GenomeGCF_040909605Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
HptH-kinase_dimHATPase_cCheW
Protein length706 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage426 / 706 aa (60.3%)Merged over positioned domains only.
Domain description1 Hpt,1 H-kinase_dim,1 HATPase_c,1 CheWSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa706 aa
Domain-by-domain annotation4 items
2 H-kinase_dim#2
324-387 aa · 64 aa · 9.1% of protein
Raw token
H-kinase_dim:324:0.00000000000000122:387:67:673 HATPase_c#3
435-574 aa · 140 aa · 19.8% of protein
Raw token
HATPase_c:435:3.84e-16:574:140:1094 CheW#4
579-706 aa · 128 aa · 18.1% of protein
Raw token
CheW:579:2.49e-30:706:135:138- Raw architecture: Hpt:5:2.17e-17:98:94:84#H-kinase_dim:324:0.00000000000000122:387:67:67#HATPase_c:435:3.84e-16:574:140:109#CheW:579:2.49e-30:706:135:138
- Domain description: 1 Hpt,1 H-kinase_dim,1 HATPase_c,1 CheW
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_040909605::NZ_JBDGCE010000001.1::G00002
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span208619-211802Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_040909605::NZ_JBDGCE010000001.1::G00002Context members
AB5Z19_RS01035AB5Z19_RS01040
Partner locus tags
AB5Z19_RS01035AB5Z19_RS01040
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_012742625.1Primary protein accession used for annex mappings.
UniProt accessionC4ZA86Primary UniProt accession resolved in the annex database.
UniProt IDC4ZA86_AGARVDisplay identifier provided by UniProt.
GO / PubMed4 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAB5Z19_RS01035Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JBDGCE010000001.1Sequence record reported by the local genomic context database.
Genomic interval208 619-210 739 nt2 121 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span208 619-211 802 ntGCF_040909605::NZ_JBDGCE010000001.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_040909605::NZ_JBDGCE010000001.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBDGCE010000001.1All displayed genes belong to this local TCS context.
Neighborhood span208 619-211 802 nt3 184 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
208 619 nt211 802 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
AB5Z19_RS01035GCF_040909605#AB5Z19_RS01035
HKCheACurrent focus
208 619-210 739 nt · Reverse (-)
AB5Z19_RS01040GCF_040909605#AB5Z19_RS01040
RRCheB
210 741-211 802 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000020605#EUBREC_RS08005Use this link to inspect the representative gene detail.
PFAM architectureHpt + P2 + H-kinase_dim + HATPase_c + CheW5 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0757396
Simplified PFAM architecture for HKOC_0757396
PFAM domain coverage: 502 / 706 aa (71.1%)
1 aa706 aa
HptP2H-kinase_dimHATPase_cCheW
- Simplified architecture: Hpt + P2 + H-kinase_dim + HATPase_c + CheW
- Raw architecture: Hpt[5-97] | P2[183-260] | H-kinase_dim[323-387] | HATPase_c[436-574] | CheW[579-705]
- Domain count: 5
- Matched identifier: HKOC_0757396
- Positioned domains: Hpt 5-97 ; P2 183-260 ; H-kinase_dim 323-387 ; HATPase_c 436-574 ; CheW 579-705
Cluster members and taxonomy
Representative gene: GCF_000020605#EUBREC_RS08005
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 491 · GCF_040909605
AssemblyASM4090960v1 · Scaffoldhaploid
Genome composition3 414 491 bp · 41,0% GCAgathobacter rectalis
Signal transduction countsGenes 96 · HK 44 · RR 51CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key