1 Response_reg#1
3-119 aa · 117 aa · 35.0% of protein
Raw token
Response_reg:3:5.66e-30:119:117:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AB5Z06_RS09640
Response regulator, unclassified
Mediterraneibacter gnavus · GCF_040909045
ClassRRTypeunclassifiedLength334 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_040909045#AB5Z06_RS09640Stable P2CS identifier used across views.
GenomeGCF_040909045Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length334 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage193 / 334 aa (57.8%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa334 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
238-277 aa · 40 aa · 12.0% of protein
Raw token
HTH_AraC:238:0.00000000371:277:40:423 HTH_AraC#3
294-329 aa · 36 aa · 10.8% of protein
Raw token
HTH_AraC:294:0.00000122:329:36:42- Raw architecture: Response_reg:3:5.66e-30:119:117:111#HTH_AraC:238:0.00000000371:277:40:42#HTH_AraC:294:0.00000122:329:36:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_040909045::NZ_JBDGDG010000012.1::G00023
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span59336-60340Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_040909045::NZ_JBDGDG010000012.1::G00023Context members
AB5Z06_RS09640
Partner locus tags
AB5Z06_RS09640
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055169459.1Primary protein accession used for annex mappings.
UniProt accessionA0A2N5PSU9Primary UniProt accession resolved in the annex database.
UniProt IDA0A2N5PSU9_MEDGNDisplay identifier provided by UniProt.
GO / PubMed3 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAB5Z06_RS09640Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JBDGDG010000012.1Sequence record reported by the local genomic context database.
Genomic interval59 336-60 340 nt1 005 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span59 336-60 340 ntGCF_040909045::NZ_JBDGDG010000012.1::G00023
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_040909045::NZ_JBDGDG010000012.1::G00023Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBDGDG010000012.1All displayed genes belong to this local TCS context.
Neighborhood span59 336-60 340 nt1 005 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
59 336 nt60 340 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
AB5Z06_RS09640GCF_040909045#AB5Z06_RS09640
RRunclassifiedCurrent focus
59 336-60 340 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001406655#ARA00_RS12075Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0512994
Simplified PFAM architecture for RROC_0512994
PFAM domain coverage: 187 / 334 aa (56.0%)
1 aa334 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[3-111] | HTH_18[252-329]
- Domain count: 2
- Matched identifier: RROC_0512994
- Positioned domains: Response_reg 3-111 ; Response_reg 3-111 ; HTH_18 252-329 ; HTH_18 252-329
Cluster members and taxonomy
Representative gene: GCF_001406655#ARA00_RS12075
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_040909045
AssemblyASM4090904v1 · Scaffoldhaploid
Genome composition3 768 984 bp · 42,5% GCMediterraneibacter gnavus
Signal transduction countsGenes 106 · HK 48 · RR 57CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key