1 Response_reg#1
4-114 aa · 111 aa · 52.6% of protein
Raw token
Response_reg:4:2.47e-34:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
WMQ18_RS20925
Response regulator, unclassified
Escherichia coli · GCF_040893565
ClassRRTypeunclassifiedLength211 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_040893565#WMQ18_RS20925Stable P2CS identifier used across views.
GenomeGCF_040893565Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Domain signature
Compact overview inferred from the domain field
Response_regGerE
Protein length211 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage168 / 211 aa (79.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 GerESummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa211 aa
Domain-by-domain annotation2 items
2 GerE#2
142-198 aa · 57 aa · 27.0% of protein
Raw token
GerE:142:5.2e-22:198:57:57- Raw architecture: Response_reg:4:2.47e-34:114:111:111#GerE:142:5.2e-22:198:57:57
- Domain description: 1 Response_reg,1 GerE
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_040893565::NZ_JBBMGZ010000052.1::G00034
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span28122-28757Genomic interval covered by the local TCS group.
Identifiers
Old locus tagWMQ18_20930RefSeq proteinWP_368305000.1
Context group ID
GCF_040893565::NZ_JBBMGZ010000052.1::G00034Context members
WMQ18_RS20925
Partner locus tags
WMQ18_RS20925
Partner old locus tags
WMQ18_20930
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_368305000.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagWMQ18_RS20925Primary locus identifier stored in the genes table.
Old locus tagWMQ18_20930Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JBBMGZ010000052.1Sequence record reported by the local genomic context database.
Genomic interval28 122-28 757 nt636 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span28 122-28 757 ntGCF_040893565::NZ_JBBMGZ010000052.1::G00034
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_040893565::NZ_JBBMGZ010000052.1::G00034Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBBMGZ010000052.1All displayed genes belong to this local TCS context.
Neighborhood span28 122-28 757 nt636 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
28 122 nt28 757 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
WMQ18_RS20925GCF_040893565#WMQ18_RS20925
RRunclassifiedCurrent focus
28 122-28 757 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_040893565#WMQ18_RS20925The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_2016061
Simplified PFAM architecture for RROC_2016061
PFAM domain coverage: 168 / 211 aa (79.6%)
1 aa211 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[4-114] | GerE[142-198]
- Domain count: 2
- Matched identifier: RROC_2016061
- Positioned domains: Response_reg 4-114 ; GerE 142-198
Cluster members and taxonomy
Representative gene: GCF_040893565#WMQ18_RS20925
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 562 · GCF_040893565
AssemblyASM4089356v1 · Contighaploid
Genome composition5 058 710 bp · 50,5% GCEscherichia coli
Signal transduction countsGenes 63 · HK 30 · RR 33CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumPseudomonadotaClassGammaproteobacteriaOrderEnterobacteralesFamilyEnterobacteriaceaeGenusEscherichia
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Pseudomonadota4Gammaproteobacteria5Enterobacterales6Enterobacteriaceae7Escherichia
Related genes
Preview from the same derived genome key