1 HAMP#1
209-278 aa · 70 aa · 12.4% of protein
Raw token
HAMP:209:1.43e-16:278:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ABXW80_RS08625
Histidine kinase, Classic
Bifidobacterium longum · GCF_040883395
ClassHKTypeClassicLength565 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_040883395#ABXW80_RS08625Stable P2CS identifier used across views.
GenomeGCF_040883395Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length565 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage248 / 565 aa (43.9%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa565 aa
Domain-by-domain annotation3 items
2 HisKA#2
290-356 aa · 67 aa · 11.9% of protein
Raw token
HisKA:290:0.0000000000000578:356:67:643 HATPase_c#3
403-513 aa · 111 aa · 19.6% of protein
Raw token
HATPase_c:403:8.14e-30:513:111:109- Raw architecture: HAMP:209:1.43e-16:278:70:69#HisKA:290:0.0000000000000578:356:67:64#HATPase_c:403:8.14e-30:513:111:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_040883395::NZ_JBEWYO010000013.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span81106-83522Genomic interval covered by the local TCS group.
Identifiers
Old locus tagABXW80_08685RefSeq proteinWP_015713774.1
Context group ID
GCF_040883395::NZ_JBEWYO010000013.1::G00005Context members
ABXW80_RS08620ABXW80_RS08625
Partner locus tags
ABXW80_RS08620ABXW80_RS08625
Partner old locus tags
ABXW80_08680ABXW80_08685
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_015713774.1Primary protein accession used for annex mappings.
UniProt accessionA0A4R0WDG5Primary UniProt accession resolved in the annex database.
UniProt IDA0A4R0WDG5_BIFLLDisplay identifier provided by UniProt.
GO / PubMed3 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagABXW80_RS08625Primary locus identifier stored in the genes table.
Old locus tagABXW80_08685Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JBEWYO010000013.1Sequence record reported by the local genomic context database.
Genomic interval81 825-83 522 nt1 698 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span81 106-83 522 ntGCF_040883395::NZ_JBEWYO010000013.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_040883395::NZ_JBEWYO010000013.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBEWYO010000013.1All displayed genes belong to this local TCS context.
Neighborhood span81 106-83 522 nt2 417 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
81 106 nt83 522 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ABXW80_RS08620GCF_040883395#ABXW80_RS08620
RROmpR
81 106-81 828 nt · Forward (+)
ABXW80_RS08625GCF_040883395#ABXW80_RS08625
HKClassicCurrent focus
81 825-83 522 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000196575#BLIF_RS07455Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1234130
Simplified PFAM architecture for HKOC_1234130
PFAM domain coverage: 230 / 565 aa (40.7%)
1 aa565 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[226-278] | HisKA[290-356] | HATPase_c[403-512]
- Domain count: 3
- Matched identifier: HKOC_1234130
- Positioned domains: HAMP 226-278 ; HisKA 290-356 ; HATPase_c 403-512
Cluster members and taxonomy
Representative gene: GCF_000196575#BLIF_RS07455
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 216 816 · GCF_040883395
AssemblyASM4088339v1 · Contighaploid
Genome composition2 484 372 bp · 60,0% GCBifidobacterium longum
Signal transduction countsGenes 20 · HK 10 · RR 10CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key