1 Response_reg#1
9-127 aa · 119 aa · 44.4% of protein
Raw token
Response_reg:9:9.46e-30:127:119:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ABVR71_RS05110
Response regulator NarL family
Bifidobacterium breve · GCF_040834035
ClassRRTypeNarLLength268 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_040834035#ABVR71_RS05110Stable P2CS identifier used across views.
GenomeGCF_040834035Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length268 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage177 / 268 aa (66.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HTH_LUXR#2
205-262 aa · 58 aa · 21.6% of protein
Raw token
HTH_LUXR:205:2.58e-24:262:58:58- Raw architecture: Response_reg:9:9.46e-30:127:119:111#HTH_LUXR:205:2.58e-24:262:58:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_040834035::NZ_CP162121.1::G00007
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1224445-1227747Genomic interval covered by the local TCS group.
Identifiers
Old locus tagABVR71_05110RefSeq proteinWP_003829060.1
Context group ID
GCF_040834035::NZ_CP162121.1::G00007Context members
ABVR71_RS05110ABVR71_RS05115
Partner locus tags
ABVR71_RS05110ABVR71_RS05115
Partner old locus tags
ABVR71_05110ABVR71_05115
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003829060.1Primary protein accession used for annex mappings.
UniProt accessionD4BNY8Primary UniProt accession resolved in the annex database.
UniProt IDD4BNY8_BIFBRDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagABVR71_RS05110Primary locus identifier stored in the genes table.
Old locus tagABVR71_05110Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP162121.1Sequence record reported by the local genomic context database.
Genomic interval1 224 445-1 225 251 nt807 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 224 445-1 227 747 ntGCF_040834035::NZ_CP162121.1::G00007
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_040834035::NZ_CP162121.1::G00007Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP162121.1All displayed genes belong to this local TCS context.
Neighborhood span1 224 445-1 227 747 nt3 303 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 224 445 nt1 227 747 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ABVR71_RS05110GCF_040834035#ABVR71_RS05110
RRNarLCurrent focus
1 224 445-1 225 251 nt · Reverse (-)
ABVR71_RS05115GCF_040834035#ABVR71_RS05115
HKClassic
1 225 273-1 227 747 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000158015#BIFBRE_RS05395Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0619440
Simplified PFAM architecture for RROC_0619440
PFAM domain coverage: 174 / 268 aa (64.9%)
1 aa268 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[9-126] | GerE[207-262]
- Domain count: 2
- Matched identifier: RROC_0619440
- Positioned domains: Response_reg 9-126 ; Response_reg 9-126 ; GerE 207-262 ; GerE 207-262
Cluster members and taxonomy
Representative gene: GCF_000158015#BIFBRE_RS05395
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 685 · GCF_040834035
AssemblyUPH_Bifidobacterium breve_BS2-PS2 · Complete Genomehaploid
Genome composition2 269 407 bp · 59,0% GCBifidobacterium breve
Signal transduction countsGenes 27 · HK 10 · RR 15CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key