1 Response_reg#1
7-82 aa · 76 aa · 37.4% of protein
Raw token
Response_reg:7:2.31e-19:82:77:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AB2568_RS25080
Response regulator OmpR family
Bacillus mycoides · GCF_040797105
ClassRRTypeOmpRLength203 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_040797105#AB2568_RS25080Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length203 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage147 / 203 aa (72.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa203 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
124-194 aa · 71 aa · 35.0% of protein
Raw token
Trans_reg_C:124:1.53e-25:194:72:77- Raw architecture: Response_reg:7:2.31e-19:82:77:111#Trans_reg_C:124:1.53e-25:194:72:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_040797105::NZ_JBFNPR010000196.1::G00069
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span7143-8744Genomic interval covered by the local TCS group.
Identifiers
Old locus tagAB2568_25080RefSeq proteinWP_367634146.1
Context group ID
GCF_040797105::NZ_JBFNPR010000196.1::G00069Context members
AB2568_RS25075AB2568_RS25080
Partner locus tags
AB2568_RS25075AB2568_RS25080
Partner old locus tags
AB2568_25075AB2568_25080
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_367634146.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAB2568_RS25080Primary locus identifier stored in the genes table.
Old locus tagAB2568_25080Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JBFNPR010000196.1Sequence record reported by the local genomic context database.
Genomic interval8 132-8 744 nt613 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span7 143-8 744 ntGCF_040797105::NZ_JBFNPR010000196.1::G00069
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_040797105::NZ_JBFNPR010000196.1::G00069Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBFNPR010000196.1All displayed genes belong to this local TCS context.
Neighborhood span7 143-8 744 nt1 602 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
7 143 nt8 744 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
AB2568_RS25075GCF_040797105#AB2568_RS25075
HKClassic
7 143-8 129 nt · Reverse (-)
AB2568_RS25080GCF_040797105#AB2568_RS25080
RROmpRCurrent focus
8 132-8 744 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000399045#IKK_RS10930Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1048741
Simplified PFAM architecture for RROC_1048741
PFAM domain coverage: 181 / 234 aa (77.4%)
1 aa234 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-112] | Trans_reg_C[154-225]
- Domain count: 2
- Matched identifier: RROC_1048741
- Positioned domains: Response_reg 4-112 ; Response_reg 4-112 ; Trans_reg_C 154-225 ; Trans_reg_C 154-225
Cluster members and taxonomy
Representative gene: GCF_000399045#IKK_RS10930
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_040797105
AssemblyASM4079710v1 · Contighaploid
Genome composition6 028 129 bp · 35,5% GCBacillus mycoides
Signal transduction countsGenes 134 · HK 70 · RR 63CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key