1 HAMP#1
39-109 aa · 71 aa · 20.2% of protein
Raw token
HAMP:39:0.000000000477:109:71:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QCI77_RS19220
Histidine kinase, Classic
Bacillus cereus group sp. MG9 · GCF_040459995
ClassHKTypeClassicLength352 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_040459995#QCI77_RS19220Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length352 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage250 / 352 aa (71.0%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa352 aa
Domain-by-domain annotation3 items
2 HisKA#2
120-187 aa · 68 aa · 19.3% of protein
Raw token
HisKA:120:5.1e-18:187:68:643 HATPase_c#3
238-348 aa · 111 aa · 31.5% of protein
Raw token
HATPase_c:238:2.6e-26:348:111:109- Raw architecture: HAMP:39:0.000000000477:109:71:69#HisKA:120:5.1e-18:187:68:64#HATPase_c:238:2.6e-26:348:111:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_040459995::NZ_JARVHC010000001.1::G00049
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span3777487-3779255Genomic interval covered by the local TCS group.
Identifiers
Old locus tagQCI77_19180RefSeq proteinWP_353825376.1
Context group ID
GCF_040459995::NZ_JARVHC010000001.1::G00049Context members
QCI77_RS19220QCI77_RS19225
Partner locus tags
QCI77_RS19220QCI77_RS19225
Partner old locus tags
QCI77_19180QCI77_19185
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_353825376.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQCI77_RS19220Primary locus identifier stored in the genes table.
Old locus tagQCI77_19180Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JARVHC010000001.1Sequence record reported by the local genomic context database.
Genomic interval3 777 487-3 778 545 nt1 059 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span3 777 487-3 779 255 ntGCF_040459995::NZ_JARVHC010000001.1::G00049
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_040459995::NZ_JARVHC010000001.1::G00049Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JARVHC010000001.1All displayed genes belong to this local TCS context.
Neighborhood span3 777 487-3 779 255 nt1 769 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
3 777 487 nt3 779 255 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
QCI77_RS19220GCF_040459995#QCI77_RS19220
HKClassicCurrent focus
3 777 487-3 778 545 nt · Reverse (-)
QCI77_RS19225GCF_040459995#QCI77_RS19225
RROmpR
3 778 542-3 779 255 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_040459995#QCI77_RS19220The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2791797
Simplified PFAM architecture for HKOC_2791797
PFAM domain coverage: 232 / 352 aa (65.9%)
1 aa352 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[56-109] | HisKA[120-186] | HATPase_c[238-348]
- Domain count: 3
- Matched identifier: HKOC_2791797
- Positioned domains: HAMP 56-109 ; HisKA 120-186 ; HATPase_c 238-348
Cluster members and taxonomy
Representative gene: GCF_040459995#QCI77_RS19220
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 3 040 247 · GCF_040459995
AssemblyASM4045999v1 · Contighaploid
Genome composition6 019 191 bp · 35,5% GCBacillus cereus group sp. MG9
Signal transduction countsGenes 129 · HK 70 · RR 59CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key