1 Response_reg#1
5-112 aa · 108 aa · 50.5% of protein
Raw token
Response_reg:5:1.63e-37:112:108:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QCI46_RS22460
Response regulator NarL family
Bacillus cereus group sp. RP32 · GCF_040459735
ClassRRTypeNarLLength214 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_040459735#QCI46_RS22460Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length214 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage161 / 214 aa (75.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa214 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
152-204 aa · 53 aa · 24.8% of protein
Raw token
HTH_LUXR:152:2.15e-20:204:53:58- Raw architecture: Response_reg:5:1.63e-37:112:108:111#HTH_LUXR:152:2.15e-20:204:53:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_040459735::NZ_JARVHO010000001.1::G00054
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span4359208-4361059Genomic interval covered by the local TCS group.
Identifiers
Old locus tagQCI46_22395RefSeq proteinWP_098085174.1
Context group ID
GCF_040459735::NZ_JARVHO010000001.1::G00054Context members
QCI46_RS22460QCI46_RS22465
Partner locus tags
QCI46_RS22460QCI46_RS22465
Partner old locus tags
QCI46_22395QCI46_22400
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_098085174.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQCI46_RS22460Primary locus identifier stored in the genes table.
Old locus tagQCI46_22395Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JARVHO010000001.1Sequence record reported by the local genomic context database.
Genomic interval4 359 208-4 359 852 nt645 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span4 359 208-4 361 059 ntGCF_040459735::NZ_JARVHO010000001.1::G00054
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_040459735::NZ_JARVHO010000001.1::G00054Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JARVHO010000001.1All displayed genes belong to this local TCS context.
Neighborhood span4 359 208-4 361 059 nt1 852 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
4 359 208 nt4 361 059 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
QCI46_RS22460GCF_040459735#QCI46_RS22460
RRNarLCurrent focus
4 359 208-4 359 852 nt · Reverse (-)
QCI46_RS22465GCF_040459735#QCI46_RS22465
HKClassic
4 359 842-4 361 059 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002555855#CN905_RS15095Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1939578
Simplified PFAM architecture for RROC_1939578
PFAM domain coverage: 166 / 214 aa (77.6%)
1 aa214 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[5-116] | GerE[151-204]
- Domain count: 2
- Matched identifier: RROC_1939578
- Positioned domains: Response_reg 5-116 ; Response_reg 5-116 ; GerE 151-204 ; GerE 151-204
Cluster members and taxonomy
Representative gene: GCF_002555855#CN905_RS15095
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 3 040 258 · GCF_040459735
AssemblyASM4045973v1 · Contighaploid
Genome composition5 802 907 bp · 35,5% GCBacillus cereus group sp. RP32
Signal transduction countsGenes 114 · HK 61 · RR 53CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key