1 Hpt#1
4-96 aa · 93 aa · 14.0% of protein
Raw token
Hpt:4:2.85e-17:96:93:84P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QCI46_RS19525
Histidine kinase, CheA
Bacillus cereus group sp. RP32 · GCF_040459735
ClassHKTypeCheALength663 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_040459735#QCI46_RS19525Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HptH-kinase_dimHATPase_cCheW
Protein length663 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage426 / 663 aa (64.3%)Merged over positioned domains only.
Domain description1 Hpt,1 H-kinase_dim,1 HATPase_c,1 CheWSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa663 aa
Domain-by-domain annotation4 items
2 H-kinase_dim#2
280-339 aa · 60 aa · 9.0% of protein
Raw token
H-kinase_dim:280:0.00000000153:339:67:673 HATPase_c#3
387-526 aa · 140 aa · 21.1% of protein
Raw token
HATPase_c:387:1.69e-17:526:140:1094 CheW#4
531-663 aa · 133 aa · 20.1% of protein
Raw token
CheW:531:2.29e-21:663:139:138- Raw architecture: Hpt:4:2.85e-17:96:93:84#H-kinase_dim:280:0.00000000153:339:67:67#HATPase_c:387:1.69e-17:526:140:109#CheW:531:2.29e-21:663:139:138
- Domain description: 1 Hpt,1 H-kinase_dim,1 HATPase_c,1 CheW
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_040459735::NZ_JARVHO010000001.1::G00045
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span3812462-3814951Genomic interval covered by the local TCS group.
Identifiers
Old locus tagQCI46_19470RefSeq proteinWP_353841210.1
Context group ID
GCF_040459735::NZ_JARVHO010000001.1::G00045Context members
QCI46_RS19525QCI46_RS19530
Partner locus tags
QCI46_RS19525QCI46_RS19530
Partner old locus tags
QCI46_19470QCI46_19475
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_353841210.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQCI46_RS19525Primary locus identifier stored in the genes table.
Old locus tagQCI46_19470Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JARVHO010000001.1Sequence record reported by the local genomic context database.
Genomic interval3 812 462-3 814 453 nt1 992 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span3 812 462-3 814 951 ntGCF_040459735::NZ_JARVHO010000001.1::G00045
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_040459735::NZ_JARVHO010000001.1::G00045Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JARVHO010000001.1All displayed genes belong to this local TCS context.
Neighborhood span3 812 462-3 814 951 nt2 490 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
3 812 462 nt3 814 951 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
QCI46_RS19525GCF_040459735#QCI46_RS19525
HKCheACurrent focus
3 812 462-3 814 453 nt · Reverse (-)
QCI46_RS19530GCF_040459735#QCI46_RS19530
RRCheY
3 814 583-3 814 951 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_040459735#QCI46_RS19525The current gene is the representative for this cluster.
PFAM architectureHpt + P2 + H-kinase_dim + HATPase_c + CheW5 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0866553
Simplified PFAM architecture for HKOC_0866553
PFAM domain coverage: 509 / 663 aa (76.8%)
1 aa663 aa
HptP2H-kinase_dimHATPase_cCheW
- Simplified architecture: Hpt + P2 + H-kinase_dim + HATPase_c + CheW
- Raw architecture: Hpt[4-103] | P2[148-225] | H-kinase_dim[280-338] | HATPase_c[387-526] | CheW[532-663]
- Domain count: 5
- Matched identifier: HKOC_0866553
- Positioned domains: Hpt 4-103 ; P2 148-225 ; H-kinase_dim 280-338 ; HATPase_c 387-526 ; CheW 532-663
Cluster members and taxonomy
Representative gene: GCF_040459735#QCI46_RS19525
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 3 040 258 · GCF_040459735
AssemblyASM4045973v1 · Contighaploid
Genome composition5 802 907 bp · 35,5% GCBacillus cereus group sp. RP32
Signal transduction countsGenes 114 · HK 61 · RR 53CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key