1 HisKA_3#1
177-244 aa · 68 aa · 18.6% of protein
Raw token
HisKA_3:177:1.75e-19:244:68:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QCI46_RS18995
Histidine kinase, Classic
Bacillus cereus group sp. RP32 · GCF_040459735
ClassHKTypeClassicLength366 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_040459735#QCI46_RS18995Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length366 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage145 / 366 aa (39.6%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa366 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
289-365 aa · 77 aa · 21.0% of protein
Raw token
HATPase_c:289:0.00000000208:365:97:109- Raw architecture: HisKA_3:177:1.75e-19:244:68:68#HATPase_c:289:0.00000000208:365:97:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_040459735::NZ_JARVHO010000001.1::G00043
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span3717718-3719461Genomic interval covered by the local TCS group.
Identifiers
Old locus tagQCI46_18940RefSeq proteinWP_353841156.1
Context group ID
GCF_040459735::NZ_JARVHO010000001.1::G00043Context members
QCI46_RS18995QCI46_RS19000
Partner locus tags
QCI46_RS18995QCI46_RS19000
Partner old locus tags
QCI46_18940QCI46_18945
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_353841156.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQCI46_RS18995Primary locus identifier stored in the genes table.
Old locus tagQCI46_18940Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JARVHO010000001.1Sequence record reported by the local genomic context database.
Genomic interval3 717 718-3 718 818 nt1 101 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span3 717 718-3 719 461 ntGCF_040459735::NZ_JARVHO010000001.1::G00043
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_040459735::NZ_JARVHO010000001.1::G00043Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JARVHO010000001.1All displayed genes belong to this local TCS context.
Neighborhood span3 717 718-3 719 461 nt1 744 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
3 717 718 nt3 719 461 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
QCI46_RS18995GCF_040459735#QCI46_RS18995
HKClassicCurrent focus
3 717 718-3 718 818 nt · Reverse (-)
QCI46_RS19000GCF_040459735#QCI46_RS19000
RRNarL
3 718 823-3 719 461 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_040459735#QCI46_RS18995The current gene is the representative for this cluster.
PFAM architectureHisKA_31 domain in the representative PFAM annotation.
PFAM architecture for HKOC_2716781
Simplified PFAM architecture for HKOC_2716781
PFAM domain coverage: 67 / 366 aa (18.3%)
1 aa366 aa
HisKA_3
- Simplified architecture: HisKA_3
- Raw architecture: HisKA_3[177-243]
- Domain count: 1
- Matched identifier: HKOC_2716781
- Positioned domains: HisKA_3 177-243
Cluster members and taxonomy
Representative gene: GCF_040459735#QCI46_RS18995
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 3 040 258 · GCF_040459735
AssemblyASM4045973v1 · Contighaploid
Genome composition5 802 907 bp · 35,5% GCBacillus cereus group sp. RP32
Signal transduction countsGenes 114 · HK 61 · RR 53CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key