1 HisKA#1
193-246 aa · 54 aa · 12.9% of protein
Raw token
HisKA:193:0.0000000134:246:55:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QCI46_RS03445
Histidine kinase, Classic
Bacillus cereus group sp. RP32 · GCF_040459735
ClassHKTypeClassicLength418 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_040459735#QCI46_RS03445Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length418 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage162 / 418 aa (38.8%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa418 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
296-403 aa · 108 aa · 25.8% of protein
Raw token
HATPase_c:296:1.67e-17:403:111:109- Raw architecture: HisKA:193:0.0000000134:246:55:64#HATPase_c:296:1.67e-17:403:111:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_040459735::NZ_JARVHO010000001.1::G00013
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span683105-684361Genomic interval covered by the local TCS group.
Identifiers
Old locus tagQCI46_03450RefSeq proteinWP_353839598.1
Context group ID
GCF_040459735::NZ_JARVHO010000001.1::G00013Context members
QCI46_RS03445
Partner locus tags
QCI46_RS03445
Partner old locus tags
QCI46_03450
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_353839598.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQCI46_RS03445Primary locus identifier stored in the genes table.
Old locus tagQCI46_03450Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JARVHO010000001.1Sequence record reported by the local genomic context database.
Genomic interval683 105-684 361 nt1 257 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span683 105-684 361 ntGCF_040459735::NZ_JARVHO010000001.1::G00013
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_040459735::NZ_JARVHO010000001.1::G00013Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JARVHO010000001.1All displayed genes belong to this local TCS context.
Neighborhood span683 105-684 361 nt1 257 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
683 105 nt684 361 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
QCI46_RS03445GCF_040459735#QCI46_RS03445
HKClassicCurrent focus
683 105-684 361 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_040459735#QCI46_RS03445The current gene is the representative for this cluster.
PFAM architectureMASE12 + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2290427
Simplified PFAM architecture for HKOC_2290427
PFAM domain coverage: 318 / 418 aa (76.1%)
1 aa418 aa
MASE12HisKAHATPase_c
- Simplified architecture: MASE12 + HisKA + HATPase_c
- Raw architecture: MASE12[10-166] | HisKA[193-246] | HATPase_c[296-402]
- Domain count: 3
- Matched identifier: HKOC_2290427
- Positioned domains: MASE12 10-166 ; HisKA 193-246 ; HATPase_c 296-402
Cluster members and taxonomy
Representative gene: GCF_040459735#QCI46_RS03445
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 3 040 258 · GCF_040459735
AssemblyASM4045973v1 · Contighaploid
Genome composition5 802 907 bp · 35,5% GCBacillus cereus group sp. RP32
Signal transduction countsGenes 114 · HK 61 · RR 53CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key