1 HAMP#1
310-377 aa · 68 aa · 11.0% of protein
Raw token
HAMP:310:0.0000000000000603:377:68:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QCI46_RS03245
Histidine kinase, Classic
Bacillus cereus group sp. RP32 · GCF_040459735
ClassHKTypeClassicLength616 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_040459735#QCI46_RS03245Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length616 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage244 / 616 aa (39.6%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa616 aa
Domain-by-domain annotation3 items
2 HisKA#2
397-461 aa · 65 aa · 10.6% of protein
Raw token
HisKA:397:0.00000000000000222:461:65:643 HATPase_c#3
505-615 aa · 111 aa · 18.0% of protein
Raw token
HATPase_c:505:3.85e-22:615:112:109- Raw architecture: HAMP:310:0.0000000000000603:377:68:69#HisKA:397:0.00000000000000222:461:65:64#HATPase_c:505:3.85e-22:615:112:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_040459735::NZ_JARVHO010000001.1::G00012
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span651350-653886Genomic interval covered by the local TCS group.
Identifiers
Old locus tagQCI46_03250RefSeq proteinWP_353839581.1
Context group ID
GCF_040459735::NZ_JARVHO010000001.1::G00012Context members
QCI46_RS03240QCI46_RS03245
Partner locus tags
QCI46_RS03240QCI46_RS03245
Partner old locus tags
QCI46_03245QCI46_03250
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_353839581.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQCI46_RS03245Primary locus identifier stored in the genes table.
Old locus tagQCI46_03250Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JARVHO010000001.1Sequence record reported by the local genomic context database.
Genomic interval652 036-653 886 nt1 851 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span651 350-653 886 ntGCF_040459735::NZ_JARVHO010000001.1::G00012
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_040459735::NZ_JARVHO010000001.1::G00012Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JARVHO010000001.1All displayed genes belong to this local TCS context.
Neighborhood span651 350-653 886 nt2 537 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
651 350 nt653 886 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
QCI46_RS03240GCF_040459735#QCI46_RS03240
RROmpR
651 350-652 039 nt · Forward (+)
QCI46_RS03245GCF_040459735#QCI46_RS03245
HKClassicCurrent focus
652 036-653 886 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_040459735#QCI46_RS03245The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0988118
Simplified PFAM architecture for HKOC_0988118
PFAM domain coverage: 225 / 616 aa (36.5%)
1 aa616 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[328-377] | HisKA[397-461] | HATPase_c[506-615]
- Domain count: 3
- Matched identifier: HKOC_0988118
- Positioned domains: HAMP 328-377 ; HisKA 397-461 ; HATPase_c 506-615
Cluster members and taxonomy
Representative gene: GCF_040459735#QCI46_RS03245
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 3 040 258 · GCF_040459735
AssemblyASM4045973v1 · Contighaploid
Genome composition5 802 907 bp · 35,5% GCBacillus cereus group sp. RP32
Signal transduction countsGenes 114 · HK 61 · RR 53CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key