1 Response_reg#1
3-112 aa · 110 aa · 49.3% of protein
Raw token
Response_reg:3:1.61e-41:112:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QCI46_RS01185
Response regulator OmpR family
Bacillus cereus group sp. RP32 · GCF_040459735
ClassRRTypeOmpRLength223 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_040459735#QCI46_RS01185Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length223 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage184 / 223 aa (82.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa223 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
148-221 aa · 74 aa · 33.2% of protein
Raw token
Trans_reg_C:148:6.76e-29:221:77:77- Raw architecture: Response_reg:3:1.61e-41:112:111:111#Trans_reg_C:148:6.76e-29:221:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_040459735::NZ_JARVHO010000001.1::G00007
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span249995-252108Genomic interval covered by the local TCS group.
Identifiers
Old locus tagQCI46_01185RefSeq proteinWP_137053281.1
Context group ID
GCF_040459735::NZ_JARVHO010000001.1::G00007Context members
QCI46_RS01185QCI46_RS01190
Partner locus tags
QCI46_RS01185QCI46_RS01190
Partner old locus tags
QCI46_01185QCI46_01190
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_137053281.1Primary protein accession used for annex mappings.
UniProt accessionA0A4U3BA61Primary UniProt accession resolved in the annex database.
UniProt IDA0A4U3BA61_9BACIDisplay identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQCI46_RS01185Primary locus identifier stored in the genes table.
Old locus tagQCI46_01185Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JARVHO010000001.1Sequence record reported by the local genomic context database.
Genomic interval249 995-250 666 nt672 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span249 995-252 108 ntGCF_040459735::NZ_JARVHO010000001.1::G00007
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_040459735::NZ_JARVHO010000001.1::G00007Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JARVHO010000001.1All displayed genes belong to this local TCS context.
Neighborhood span249 995-252 108 nt2 114 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
249 995 nt252 108 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
QCI46_RS01185GCF_040459735#QCI46_RS01185
RROmpRCurrent focus
249 995-250 666 nt · Forward (+)
QCI46_RS01190GCF_040459735#QCI46_RS01190
HKClassic
250 678-252 108 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_005217335#FC694_RS23525Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1602634
Simplified PFAM architecture for RROC_1602634
PFAM domain coverage: 183 / 223 aa (82.1%)
1 aa223 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[3-111] | Trans_reg_C[148-221]
- Domain count: 2
- Matched identifier: RROC_1602634
- Positioned domains: Response_reg 3-111 ; Response_reg 3-111 ; Trans_reg_C 148-221 ; Trans_reg_C 148-221
Cluster members and taxonomy
Representative gene: GCF_005217335#FC694_RS23525
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 3 040 258 · GCF_040459735
AssemblyASM4045973v1 · Contighaploid
Genome composition5 802 907 bp · 35,5% GCBacillus cereus group sp. RP32
Signal transduction countsGenes 114 · HK 61 · RR 53CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key