1 GAF#1
29-166 aa · 138 aa · 26.7% of protein
Raw token
GAF:29:0.000000000000654:166:141:133P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QCI46_RS00395
Histidine kinase, Classic
Bacillus cereus group sp. RP32 · GCF_040459735
ClassHKTypeClassicLength516 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_040459735#QCI46_RS00395Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
GAFHisKA_3HATPase_c
Protein length516 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage297 / 516 aa (57.6%)Merged over positioned domains only.
Domain description1 GAF,1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa516 aa
Domain-by-domain annotation3 items
2 HisKA_3#2
326-393 aa · 68 aa · 13.2% of protein
Raw token
HisKA_3:326:1.37e-22:393:68:683 HATPase_c#3
426-516 aa · 91 aa · 17.6% of protein
Raw token
HATPase_c:426:0.00000000496:516:106:109- Raw architecture: GAF:29:0.000000000000654:166:141:133#HisKA_3:326:1.37e-22:393:68:68#HATPase_c:426:0.00000000496:516:106:109
- Domain description: 1 GAF,1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_040459735::NZ_JARVHO010000001.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span82677-84895Genomic interval covered by the local TCS group.
Identifiers
Old locus tagQCI46_00395RefSeq proteinWP_353839360.1
Context group ID
GCF_040459735::NZ_JARVHO010000001.1::G00004Context members
QCI46_RS00395QCI46_RS00400
Partner locus tags
QCI46_RS00395QCI46_RS00400
Partner old locus tags
QCI46_00395QCI46_00400
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_353839360.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQCI46_RS00395Primary locus identifier stored in the genes table.
Old locus tagQCI46_00395Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JARVHO010000001.1Sequence record reported by the local genomic context database.
Genomic interval82 677-84 227 nt1 551 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span82 677-84 895 ntGCF_040459735::NZ_JARVHO010000001.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_040459735::NZ_JARVHO010000001.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JARVHO010000001.1All displayed genes belong to this local TCS context.
Neighborhood span82 677-84 895 nt2 219 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
82 677 nt84 895 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
QCI46_RS00395GCF_040459735#QCI46_RS00395
HKClassicCurrent focus
82 677-84 227 nt · Forward (+)
QCI46_RS00400GCF_040459735#QCI46_RS00400
RRNarL
84 248-84 895 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_040459735#QCI46_RS00395The current gene is the representative for this cluster.
PFAM architectureGAF_2 + HisKA_3 + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1406591
Simplified PFAM architecture for HKOC_1406591
PFAM domain coverage: 299 / 516 aa (57.9%)
1 aa516 aa
GAF_2HisKA_3HATPase_c
- Simplified architecture: GAF_2 + HisKA_3 + HATPase_c
- Raw architecture: GAF_2[25-166] | HisKA_3[326-393] | HATPase_c[427-515]
- Domain count: 3
- Matched identifier: HKOC_1406591
- Positioned domains: GAF_2 25-166 ; HisKA_3 326-393 ; HATPase_c 427-515
Cluster members and taxonomy
Representative gene: GCF_040459735#QCI46_RS00395
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 3 040 258 · GCF_040459735
AssemblyASM4045973v1 · Contighaploid
Genome composition5 802 907 bp · 35,5% GCBacillus cereus group sp. RP32
Signal transduction countsGenes 114 · HK 61 · RR 53CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key