1 Response_reg#1
4-114 aa · 111 aa · 50.5% of protein
Raw token
Response_reg:4:6.56e-30:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ABKP79_RS00815
Response regulator OmpR family
Bifidobacterium breve · GCF_040150935
ClassRRTypeOmpRLength220 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_040150935#ABKP79_RS00815Stable P2CS identifier used across views.
GenomeGCF_040150935Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length220 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage184 / 220 aa (83.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa220 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
147-219 aa · 73 aa · 33.2% of protein
Raw token
Trans_reg_C:147:0.000000000000513:219:77:77- Raw architecture: Response_reg:4:6.56e-30:114:111:111#Trans_reg_C:147:0.000000000000513:219:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_040150935::NZ_JBDXSG010000001.1::G00003
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span163083-165037Genomic interval covered by the local TCS group.
Identifiers
Old locus tagABKP79_00810RefSeq proteinWP_349555735.1
Context group ID
GCF_040150935::NZ_JBDXSG010000001.1::G00003Context members
ABKP79_RS00810ABKP79_RS00815
Partner locus tags
ABKP79_RS00810ABKP79_RS00815
Partner old locus tags
ABKP79_00805ABKP79_00810
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_349555735.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagABKP79_RS00815Primary locus identifier stored in the genes table.
Old locus tagABKP79_00810Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JBDXSG010000001.1Sequence record reported by the local genomic context database.
Genomic interval164 375-165 037 nt663 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span163 083-165 037 ntGCF_040150935::NZ_JBDXSG010000001.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_040150935::NZ_JBDXSG010000001.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBDXSG010000001.1All displayed genes belong to this local TCS context.
Neighborhood span163 083-165 037 nt1 955 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
163 083 nt165 037 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ABKP79_RS00810GCF_040150935#ABKP79_RS00810
HKClassic
163 083-164 378 nt · Reverse (-)
ABKP79_RS00815GCF_040150935#ABKP79_RS00815
RROmpRCurrent focus
164 375-165 037 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_040150935#ABKP79_RS00815The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1752200
Simplified PFAM architecture for RROC_1752200
PFAM domain coverage: 184 / 220 aa (83.6%)
1 aa220 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-114] | Trans_reg_C[147-219]
- Domain count: 2
- Matched identifier: RROC_1752200
- Positioned domains: Response_reg 4-114 ; Trans_reg_C 147-219
Cluster members and taxonomy
Representative gene: GCF_040150935#ABKP79_RS00815
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 685 · GCF_040150935
AssemblyASM4015093v1 · Contighaploid
Genome composition2 380 900 bp · 59,0% GCBifidobacterium breve
Signal transduction countsGenes 28 · HK 11 · RR 16CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key