1 HAMP#1
127-197 aa · 71 aa · 16.5% of protein
Raw token
HAMP:127:0.00000000699:197:71:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ABKP79_RS00810
Histidine kinase, Classic
Bifidobacterium breve · GCF_040150935
ClassHKTypeClassicLength431 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_040150935#ABKP79_RS00810Stable P2CS identifier used across views.
GenomeGCF_040150935Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length431 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage233 / 431 aa (54.1%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa431 aa
Domain-by-domain annotation3 items
2 HisKA#2
202-266 aa · 65 aa · 15.1% of protein
Raw token
HisKA:202:0.00000000000962:266:65:643 HATPase_c#3
313-409 aa · 97 aa · 22.5% of protein
Raw token
HATPase_c:313:0.0000000000339:409:102:109- Raw architecture: HAMP:127:0.00000000699:197:71:69#HisKA:202:0.00000000000962:266:65:64#HATPase_c:313:0.0000000000339:409:102:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_040150935::NZ_JBDXSG010000001.1::G00003
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span163083-165037Genomic interval covered by the local TCS group.
Identifiers
Old locus tagABKP79_00805RefSeq proteinWP_349555733.1
Context group ID
GCF_040150935::NZ_JBDXSG010000001.1::G00003Context members
ABKP79_RS00810ABKP79_RS00815
Partner locus tags
ABKP79_RS00810ABKP79_RS00815
Partner old locus tags
ABKP79_00805ABKP79_00810
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_349555733.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagABKP79_RS00810Primary locus identifier stored in the genes table.
Old locus tagABKP79_00805Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JBDXSG010000001.1Sequence record reported by the local genomic context database.
Genomic interval163 083-164 378 nt1 296 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span163 083-165 037 ntGCF_040150935::NZ_JBDXSG010000001.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_040150935::NZ_JBDXSG010000001.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBDXSG010000001.1All displayed genes belong to this local TCS context.
Neighborhood span163 083-165 037 nt1 955 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
163 083 nt165 037 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ABKP79_RS00810GCF_040150935#ABKP79_RS00810
HKClassicCurrent focus
163 083-164 378 nt · Reverse (-)
ABKP79_RS00815GCF_040150935#ABKP79_RS00815
RROmpR
164 375-165 037 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_040150935#ABKP79_RS00810The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2168967
Simplified PFAM architecture for HKOC_2168967
PFAM domain coverage: 162 / 431 aa (37.6%)
1 aa431 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[202-266] | HATPase_c[315-411]
- Domain count: 2
- Matched identifier: HKOC_2168967
- Positioned domains: HisKA 202-266 ; HATPase_c 315-411
Cluster members and taxonomy
Representative gene: GCF_040150935#ABKP79_RS00810
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 685 · GCF_040150935
AssemblyASM4015093v1 · Contighaploid
Genome composition2 380 900 bp · 59,0% GCBifidobacterium breve
Signal transduction countsGenes 28 · HK 11 · RR 16CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key