1 Response_reg#1
3-111 aa · 109 aa · 83.2% of protein
Raw token
Response_reg:3:0.0000000000104:111:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ABHC50_RS18795
Response regulator, CheY family
Mediterraneibacter gnavus · GCF_040113255
ClassRRTypeCheYLength131 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_040113255#ABHC50_RS18795Stable P2CS identifier used across views.
GenomeGCF_040113255Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length131 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage109 / 131 aa (83.2%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa131 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:3:0.0000000000104:111:113:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_040113255::NZ_JBDPGS010000364.1::G00027
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span1-395Genomic interval covered by the local TCS group.
Identifiers
Old locus tagABHC50_18800RefSeq proteinWP_349336849.1
Context group ID
GCF_040113255::NZ_JBDPGS010000364.1::G00027Context members
ABHC50_RS18795
Partner locus tags
ABHC50_RS18795
Partner old locus tags
ABHC50_18800
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_349336849.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagABHC50_RS18795Primary locus identifier stored in the genes table.
Old locus tagABHC50_18800Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JBDPGS010000364.1Sequence record reported by the local genomic context database.
Genomic interval1-395 nt395 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1-395 ntGCF_040113255::NZ_JBDPGS010000364.1::G00027
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_040113255::NZ_JBDPGS010000364.1::G00027Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBDPGS010000364.1All displayed genes belong to this local TCS context.
Neighborhood span1-395 nt395 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 nt395 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
ABHC50_RS18795GCF_040113255#ABHC50_RS18795
RRCheYCurrent focus
1-395 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003468635#DW812_RS18050Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0940430
Simplified PFAM architecture for RROC_0940430
PFAM domain coverage: 171 / 238 aa (71.8%)
1 aa238 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[26-113] | LytTR[144-226]
- Domain count: 2
- Matched identifier: RROC_0940430
- Positioned domains: Response_reg 26-113 ; Response_reg 26-113 ; LytTR 144-226 ; LytTR 144-226
Cluster members and taxonomy
Representative gene: GCF_003468635#DW812_RS18050
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_040113255
AssemblyASM4011325v1 · Scaffoldhaploid
Genome composition3 692 196 bp · 42,0% GCMediterraneibacter gnavus
Signal transduction countsGenes 82 · HK 38 · RR 42CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key