1 HisKA#1
272-339 aa · 68 aa · 13.6% of protein
Raw token
HisKA:272:0.00000000000122:339:68:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ABHC50_RS15080
Histidine kinase, Classic
Mediterraneibacter gnavus · GCF_040113255
ClassHKTypeClassicLength500 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_040113255#ABHC50_RS15080Stable P2CS identifier used across views.
GenomeGCF_040113255Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length500 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage181 / 500 aa (36.2%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa500 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
383-495 aa · 113 aa · 22.6% of protein
Raw token
HATPase_c:383:1.34e-28:495:113:109- Raw architecture: HisKA:272:0.00000000000122:339:68:64#HATPase_c:383:1.34e-28:495:113:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_040113255::NZ_JBDPGS010000136.1::G00008
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1-2202Genomic interval covered by the local TCS group.
Identifiers
Old locus tagABHC50_15080RefSeq proteinWP_349336699.1
Context group ID
GCF_040113255::NZ_JBDPGS010000136.1::G00008Context members
ABHC50_RS15080ABHC50_RS15085
Partner locus tags
ABHC50_RS15080ABHC50_RS15085
Partner old locus tags
ABHC50_15080ABHC50_15085
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_349336699.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagABHC50_RS15080Primary locus identifier stored in the genes table.
Old locus tagABHC50_15080Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JBDPGS010000136.1Sequence record reported by the local genomic context database.
Genomic interval1-1 505 nt1 505 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1-2 202 ntGCF_040113255::NZ_JBDPGS010000136.1::G00008
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_040113255::NZ_JBDPGS010000136.1::G00008Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBDPGS010000136.1All displayed genes belong to this local TCS context.
Neighborhood span1-2 202 nt2 202 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 nt2 202 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ABHC50_RS15080GCF_040113255#ABHC50_RS15080
HKClassicCurrent focus
1-1 505 nt · Forward (+)
ABHC50_RS15085GCF_040113255#ABHC50_RS15085
RROmpR
1 498-2 202 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001406655#ARA00_RS07015Use this link to inspect the representative gene detail.
PFAM architectureDUF4118 + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1411584
Simplified PFAM architecture for HKOC_1411584
PFAM domain coverage: 286 / 514 aa (55.6%)
1 aa514 aa
DUF4118HisKAHATPase_c
- Simplified architecture: DUF4118 + HisKA + HATPase_c
- Raw architecture: DUF4118[17-123] | HisKA[286-353] | HATPase_c[398-508]
- Domain count: 3
- Matched identifier: HKOC_1411584
- Positioned domains: DUF4118 17-123 ; HisKA 286-353 ; HATPase_c 398-508
Cluster members and taxonomy
Representative gene: GCF_001406655#ARA00_RS07015
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_040113255
AssemblyASM4011325v1 · Scaffoldhaploid
Genome composition3 692 196 bp · 42,0% GCMediterraneibacter gnavus
Signal transduction countsGenes 82 · HK 38 · RR 42CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key