1 HisKA#1
94-154 aa · 61 aa · 19.5% of protein
Raw token
HisKA:94:0.0000000000000286:154:61:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ABHC50_RS13385
Histidine kinase, Classic
Mediterraneibacter gnavus · GCF_040113255
ClassHKTypeClassicLength313 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_040113255#ABHC50_RS13385Stable P2CS identifier used across views.
GenomeGCF_040113255Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length313 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage170 / 313 aa (54.3%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa313 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
200-308 aa · 109 aa · 34.8% of protein
Raw token
HATPase_c:200:9.07e-25:308:109:109- Raw architecture: HisKA:94:0.0000000000000286:154:61:64#HATPase_c:200:9.07e-25:308:109:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_040113255::NZ_JBDPGS010000095.1::G00045
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span5242-6866Genomic interval covered by the local TCS group.
Identifiers
Old locus tagABHC50_13385RefSeq proteinWP_004844850.1
Context group ID
GCF_040113255::NZ_JBDPGS010000095.1::G00045Context members
ABHC50_RS13385ABHC50_RS13390
Partner locus tags
ABHC50_RS13385ABHC50_RS13390
Partner old locus tags
ABHC50_13385ABHC50_13390
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_004844850.1Primary protein accession used for annex mappings.
UniProt accessionA7B8K3Primary UniProt accession resolved in the annex database.
UniProt IDA7B8K3_MEDG7Display identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagABHC50_RS13385Primary locus identifier stored in the genes table.
Old locus tagABHC50_13385Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JBDPGS010000095.1Sequence record reported by the local genomic context database.
Genomic interval5 242-6 183 nt942 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span5 242-6 866 ntGCF_040113255::NZ_JBDPGS010000095.1::G00045
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_040113255::NZ_JBDPGS010000095.1::G00045Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBDPGS010000095.1All displayed genes belong to this local TCS context.
Neighborhood span5 242-6 866 nt1 625 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
5 242 nt6 866 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ABHC50_RS13385GCF_040113255#ABHC50_RS13385
HKClassicCurrent focus
5 242-6 183 nt · Reverse (-)
ABHC50_RS13390GCF_040113255#ABHC50_RS13390
RROmpR
6 180-6 866 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000169475#RUMGNA_RS17140Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2875068
Simplified PFAM architecture for HKOC_2875068
PFAM domain coverage: 171 / 313 aa (54.6%)
1 aa313 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[93-154] | HATPase_c[201-309]
- Domain count: 2
- Matched identifier: HKOC_2875068
- Positioned domains: HisKA 93-154 ; HATPase_c 201-309
Cluster members and taxonomy
Representative gene: GCF_000169475#RUMGNA_RS17140
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_040113255
AssemblyASM4011325v1 · Scaffoldhaploid
Genome composition3 692 196 bp · 42,0% GCMediterraneibacter gnavus
Signal transduction countsGenes 82 · HK 38 · RR 42CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key