1 HAMP#1
150-221 aa · 72 aa · 15.8% of protein
Raw token
HAMP:150:0.000000745:221:72:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ABHC50_RS13065
Histidine kinase, Classic
Mediterraneibacter gnavus · GCF_040113255
ClassHKTypeClassicLength456 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_040113255#ABHC50_RS13065Stable P2CS identifier used across views.
GenomeGCF_040113255Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length456 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage238 / 456 aa (52.2%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa456 aa
Domain-by-domain annotation3 items
2 HisKA#2
232-289 aa · 58 aa · 12.7% of protein
Raw token
HisKA:232:0.000000143:289:59:643 HATPase_c#3
343-450 aa · 108 aa · 23.7% of protein
Raw token
HATPase_c:343:4.69e-17:450:108:109- Raw architecture: HAMP:150:0.000000745:221:72:69#HisKA:232:0.000000143:289:59:64#HATPase_c:343:4.69e-17:450:108:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_040113255::NZ_JBDPGS010000090.1::G00043
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span4657-6677Genomic interval covered by the local TCS group.
Identifiers
Old locus tagABHC50_13065RefSeq proteinWP_009244859.1
Context group ID
GCF_040113255::NZ_JBDPGS010000090.1::G00043Context members
ABHC50_RS13060ABHC50_RS13065
Partner locus tags
ABHC50_RS13060ABHC50_RS13065
Partner old locus tags
ABHC50_13060ABHC50_13065
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_009244859.1Primary protein accession used for annex mappings.
UniProt accessionA0A2N5NT39Primary UniProt accession resolved in the annex database.
UniProt IDA0A2N5NT39_MEDGNDisplay identifier provided by UniProt.
GO / PubMed2 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagABHC50_RS13065Primary locus identifier stored in the genes table.
Old locus tagABHC50_13065Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JBDPGS010000090.1Sequence record reported by the local genomic context database.
Genomic interval5 307-6 677 nt1 371 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span4 657-6 677 ntGCF_040113255::NZ_JBDPGS010000090.1::G00043
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_040113255::NZ_JBDPGS010000090.1::G00043Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBDPGS010000090.1All displayed genes belong to this local TCS context.
Neighborhood span4 657-6 677 nt2 021 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
4 657 nt6 677 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ABHC50_RS13060GCF_040113255#ABHC50_RS13060
RROmpR
4 657-5 316 nt · Forward (+)
ABHC50_RS13065GCF_040113255#ABHC50_RS13065
HKClassicCurrent focus
5 307-6 677 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002865405#CDL27_RS06085Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1890183
Simplified PFAM architecture for HKOC_1890183
PFAM domain coverage: 161 / 456 aa (35.3%)
1 aa456 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[233-285] | HATPase_c[344-451]
- Domain count: 2
- Matched identifier: HKOC_1890183
- Positioned domains: HisKA 233-285 ; HATPase_c 344-451
Cluster members and taxonomy
Representative gene: GCF_002865405#CDL27_RS06085
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_040113255
AssemblyASM4011325v1 · Scaffoldhaploid
Genome composition3 692 196 bp · 42,0% GCMediterraneibacter gnavus
Signal transduction countsGenes 82 · HK 38 · RR 42CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key