1 HAMP#1
144-213 aa · 70 aa · 15.3% of protein
Raw token
HAMP:144:0.0000000000181:213:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ABHC50_RS12755
Histidine kinase, Classic
Mediterraneibacter gnavus · GCF_040113255
ClassHKTypeClassicLength457 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_040113255#ABHC50_RS12755Stable P2CS identifier used across views.
GenomeGCF_040113255Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length457 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage239 / 457 aa (52.3%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa457 aa
Domain-by-domain annotation3 items
2 HisKA#2
238-302 aa · 65 aa · 14.2% of protein
Raw token
HisKA:238:0.000000000125:302:65:643 HATPase_c#3
348-451 aa · 104 aa · 22.8% of protein
Raw token
HATPase_c:348:5.77e-18:451:109:109- Raw architecture: HAMP:144:0.0000000000181:213:70:69#HisKA:238:0.000000000125:302:65:64#HATPase_c:348:5.77e-18:451:109:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_040113255::NZ_JBDPGS010000085.1::G00040
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span9161-11189Genomic interval covered by the local TCS group.
Identifiers
Old locus tagABHC50_12755RefSeq proteinWP_156734564.1
Context group ID
GCF_040113255::NZ_JBDPGS010000085.1::G00040Context members
ABHC50_RS12750ABHC50_RS12755
Partner locus tags
ABHC50_RS12750ABHC50_RS12755
Partner old locus tags
ABHC50_12750ABHC50_12755
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_156734564.1Primary protein accession used for annex mappings.
UniProt accessionA0A6N3FY65Primary UniProt accession resolved in the annex database.
UniProt IDA0A6N3FY65_MEDGNDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagABHC50_RS12755Primary locus identifier stored in the genes table.
Old locus tagABHC50_12755Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JBDPGS010000085.1Sequence record reported by the local genomic context database.
Genomic interval9 816-11 189 nt1 374 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span9 161-11 189 ntGCF_040113255::NZ_JBDPGS010000085.1::G00040
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_040113255::NZ_JBDPGS010000085.1::G00040Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBDPGS010000085.1All displayed genes belong to this local TCS context.
Neighborhood span9 161-11 189 nt2 029 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
9 161 nt11 189 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ABHC50_RS12750GCF_040113255#ABHC50_RS12750
RROmpR
9 161-9 832 nt · Forward (+)
ABHC50_RS12755GCF_040113255#ABHC50_RS12755
HKClassicCurrent focus
9 816-11 189 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013300015#G4394_RS10830Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1879152
Simplified PFAM architecture for HKOC_1879152
PFAM domain coverage: 216 / 457 aa (47.3%)
1 aa457 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[163-212] | HisKA[239-302] | HATPase_c[349-450]
- Domain count: 3
- Matched identifier: HKOC_1879152
- Positioned domains: HAMP 163-212 ; HisKA 239-302 ; HATPase_c 349-450
Cluster members and taxonomy
Representative gene: GCF_013300015#G4394_RS10830
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_040113255
AssemblyASM4011325v1 · Scaffoldhaploid
Genome composition3 692 196 bp · 42,0% GCMediterraneibacter gnavus
Signal transduction countsGenes 82 · HK 38 · RR 42CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key