1 Response_reg#1
4-113 aa · 110 aa · 47.6% of protein
Raw token
Response_reg:4:5.66e-35:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ABHC50_RS09720
Response regulator OmpR family
Mediterraneibacter gnavus · GCF_040113255
ClassRRTypeOmpRLength231 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_040113255#ABHC50_RS09720Stable P2CS identifier used across views.
GenomeGCF_040113255Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length231 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 231 aa (81.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa231 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
152-228 aa · 77 aa · 33.3% of protein
Raw token
Trans_reg_C:152:6.2e-31:228:77:77- Raw architecture: Response_reg:4:5.66e-35:113:111:111#Trans_reg_C:152:6.2e-31:228:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_040113255::NZ_JBDPGS010000048.1::G00031
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span16406-19718Genomic interval covered by the local TCS group.
Identifiers
Old locus tagABHC50_09720RefSeq proteinWP_195518506.1
Context group ID
GCF_040113255::NZ_JBDPGS010000048.1::G00031Context members
ABHC50_RS09715ABHC50_RS09720
Partner locus tags
ABHC50_RS09715ABHC50_RS09720
Partner old locus tags
ABHC50_09715ABHC50_09720
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_195518506.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagABHC50_RS09720Primary locus identifier stored in the genes table.
Old locus tagABHC50_09720Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JBDPGS010000048.1Sequence record reported by the local genomic context database.
Genomic interval19 023-19 718 nt696 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span16 406-19 718 ntGCF_040113255::NZ_JBDPGS010000048.1::G00031
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_040113255::NZ_JBDPGS010000048.1::G00031Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBDPGS010000048.1All displayed genes belong to this local TCS context.
Neighborhood span16 406-19 718 nt3 313 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
16 406 nt19 718 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ABHC50_RS09715GCF_040113255#ABHC50_RS09715
HKClassic
16 406-19 009 nt · Reverse (-)
ABHC50_RS09720GCF_040113255#ABHC50_RS09720
RROmpRCurrent focus
19 023-19 718 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_015557345#I2G32_RS04240Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1175274
Simplified PFAM architecture for RROC_1175274
PFAM domain coverage: 186 / 231 aa (80.5%)
1 aa231 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-113] | Trans_reg_C[152-227]
- Domain count: 2
- Matched identifier: RROC_1175274
- Positioned domains: Response_reg 4-113 ; Trans_reg_C 152-227
Cluster members and taxonomy
Representative gene: GCF_015557345#I2G32_RS04240
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_040113255
AssemblyASM4011325v1 · Scaffoldhaploid
Genome composition3 692 196 bp · 42,0% GCMediterraneibacter gnavus
Signal transduction countsGenes 82 · HK 38 · RR 42CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key