1 Response_reg#1
4-114 aa · 111 aa · 49.8% of protein
Raw token
Response_reg:4:1.05e-27:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ABHC50_RS05330
Response regulator OmpR family
Mediterraneibacter gnavus · GCF_040113255
ClassRRTypeOmpRLength223 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_040113255#ABHC50_RS05330Stable P2CS identifier used across views.
GenomeGCF_040113255Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length223 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage185 / 223 aa (83.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa223 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
146-219 aa · 74 aa · 33.2% of protein
Raw token
Trans_reg_C:146:6.37e-25:219:76:77- Raw architecture: Response_reg:4:1.05e-27:114:111:111#Trans_reg_C:146:6.37e-25:219:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_040113255::NZ_JBDPGS010000017.1::G00013
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span29426-31179Genomic interval covered by the local TCS group.
Identifiers
Old locus tagABHC50_05330RefSeq proteinWP_009243908.1
Context group ID
GCF_040113255::NZ_JBDPGS010000017.1::G00013Context members
ABHC50_RS05325ABHC50_RS05330
Partner locus tags
ABHC50_RS05325ABHC50_RS05330
Partner old locus tags
ABHC50_05325ABHC50_05330
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_009243908.1Primary protein accession used for annex mappings.
UniProt accessionA0A829NYL5Primary UniProt accession resolved in the annex database.
UniProt IDA0A829NYL5_MEDG5Display identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagABHC50_RS05330Primary locus identifier stored in the genes table.
Old locus tagABHC50_05330Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JBDPGS010000017.1Sequence record reported by the local genomic context database.
Genomic interval30 508-31 179 nt672 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span29 426-31 179 ntGCF_040113255::NZ_JBDPGS010000017.1::G00013
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_040113255::NZ_JBDPGS010000017.1::G00013Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBDPGS010000017.1All displayed genes belong to this local TCS context.
Neighborhood span29 426-31 179 nt1 754 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
29 426 nt31 179 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ABHC50_RS05325GCF_040113255#ABHC50_RS05325
HKClassic
29 426-30 511 nt · Reverse (-)
ABHC50_RS05330GCF_040113255#ABHC50_RS05330
RROmpRCurrent focus
30 508-31 179 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000169475#RUMGNA_RS01810Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1587610
Simplified PFAM architecture for RROC_1587610
PFAM domain coverage: 184 / 223 aa (82.5%)
1 aa223 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-113] | Trans_reg_C[146-219]
- Domain count: 2
- Matched identifier: RROC_1587610
- Positioned domains: Response_reg 4-113 ; Response_reg 4-113 ; Trans_reg_C 146-219 ; Trans_reg_C 146-219
Cluster members and taxonomy
Representative gene: GCF_000169475#RUMGNA_RS01810
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_040113255
AssemblyASM4011325v1 · Scaffoldhaploid
Genome composition3 692 196 bp · 42,0% GCMediterraneibacter gnavus
Signal transduction countsGenes 82 · HK 38 · RR 42CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key