1 Response_reg#1
4-116 aa · 113 aa · 48.1% of protein
Raw token
Response_reg:4:0.000000000000374:116:115:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
WMO38_RS01845
Response regulator LytTR family
Lachnospira intestinalis · GCF_040096395
ClassRRTypeLytTRLength235 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_040096395#WMO38_RS01845Stable P2CS identifier used across views.
GenomeGCF_040096395Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Lachnospira
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length235 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage204 / 235 aa (86.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 LytTR#2
136-226 aa · 91 aa · 38.7% of protein
Raw token
LytTR:136:2.49e-17:226:96:98- Raw architecture: Response_reg:4:0.000000000000374:116:115:111#LytTR:136:2.49e-17:226:96:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_040096395::NZ_JBBMES010000002.1::G00007
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span18616-19323Genomic interval covered by the local TCS group.
Identifiers
Old locus tagWMO38_01845RefSeq proteinWP_015567858.1
Context group ID
GCF_040096395::NZ_JBBMES010000002.1::G00007Context members
WMO38_RS01845
Partner locus tags
WMO38_RS01845
Partner old locus tags
WMO38_01845
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_015567858.1Primary protein accession used for annex mappings.
UniProt accessionA0ABR7MXA7Primary UniProt accession resolved in the annex database.
UniProt IDA0ABR7MXA7_9FIRMDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagWMO38_RS01845Primary locus identifier stored in the genes table.
Old locus tagWMO38_01845Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JBBMES010000002.1Sequence record reported by the local genomic context database.
Genomic interval18 616-19 323 nt708 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span18 616-19 323 ntGCF_040096395::NZ_JBBMES010000002.1::G00007
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_040096395::NZ_JBBMES010000002.1::G00007Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBBMES010000002.1All displayed genes belong to this local TCS context.
Neighborhood span18 616-19 323 nt708 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
18 616 nt19 323 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
WMO38_RS01845GCF_040096395#WMO38_RS01845
RRLytTRCurrent focus
18 616-19 323 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_015555785#I2G12_RS21365Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0871200
Simplified PFAM architecture for RROC_0871200
PFAM domain coverage: 201 / 241 aa (83.4%)
1 aa241 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[10-121] | LytTR[144-232]
- Domain count: 2
- Matched identifier: RROC_0871200
- Positioned domains: Response_reg 10-121 ; LytTR 144-232
Cluster members and taxonomy
Representative gene: GCF_015555785#I2G12_RS21365
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 3 133 158 · GCF_040096395
AssemblyASM4009639v1 · Contigreference genome · haploid
Genome composition3 153 493 bp · 37,0% GCLachnospira intestinalis
Signal transduction countsGenes 53 · HK 22 · RR 31CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusLachnospira
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Lachnospira
Related genes
Preview from the same derived genome key