1 HisKA#1
85-150 aa · 66 aa · 21.5% of protein
Raw token
HisKA:85:0.00000000000267:150:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AAAU22_RS02265
Histidine kinase, Classic
[Clostridium] symbiosum · GCF_040095205
ClassHKTypeClassicLength307 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_040095205#AAAU22_RS02265Stable P2CS identifier used across views.
GenomeGCF_040095205Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Lachnoclostridium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length307 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage170 / 307 aa (55.4%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HATPase_c#2
196-299 aa · 104 aa · 33.9% of protein
Raw token
HATPase_c:196:1.69e-27:299:104:109- Raw architecture: HisKA:85:0.00000000000267:150:66:64#HATPase_c:196:1.69e-27:299:104:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_040095205::NZ_JBBNGG010000003.1::G00042
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span93659-95588Genomic interval covered by the local TCS group.
Identifiers
Old locus tagAAAU22_02255RefSeq proteinWP_302819648.1
Context group ID
GCF_040095205::NZ_JBBNGG010000003.1::G00042Context members
AAAU22_RS02265AAAU22_RS02270
Partner locus tags
AAAU22_RS02265AAAU22_RS02270
Partner old locus tags
AAAU22_02255AAAU22_02260
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_302819648.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAAAU22_RS02265Primary locus identifier stored in the genes table.
Old locus tagAAAU22_02255Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JBBNGG010000003.1Sequence record reported by the local genomic context database.
Genomic interval93 659-94 582 nt924 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span93 659-95 588 ntGCF_040095205::NZ_JBBNGG010000003.1::G00042
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_040095205::NZ_JBBNGG010000003.1::G00042Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBBNGG010000003.1All displayed genes belong to this local TCS context.
Neighborhood span93 659-95 588 nt1 930 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
93 659 nt95 588 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
AAAU22_RS02265GCF_040095205#AAAU22_RS02265
HKClassicCurrent focus
93 659-94 582 nt · Reverse (-)
AAAU22_RS02270GCF_040095205#AAAU22_RS02270
RROmpR
94 905-95 588 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_024464175#NO348_RS18870Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2348990
Simplified PFAM architecture for HKOC_2348990
PFAM domain coverage: 170 / 411 aa (41.4%)
1 aa411 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[190-254] | HATPase_c[300-404]
- Domain count: 2
- Matched identifier: HKOC_2348990
- Positioned domains: HisKA 190-254 ; HATPase_c 300-404
Cluster members and taxonomy
Representative gene: GCF_024464175#NO348_RS18870
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 512 · GCF_040095205
AssemblyASM4009520v1 · Contighaploid
Genome composition5 046 588 bp · 47,5% GC[Clostridium] symbiosum
Signal transduction countsGenes 124 · HK 61 · RR 59CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusLachnoclostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Lachnoclostridium
Related genes
Preview from the same derived genome key