1 Response_reg#1
5-113 aa · 109 aa · 48.2% of protein
Raw token
Response_reg:5:1.43e-27:113:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AAAU20_RS11540
Response regulator OmpR family
Faecalibacterium prausnitzii · GCF_040094545
ClassRRTypeOmpRLength226 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_040094545#AAAU20_RS11540Stable P2CS identifier used across views.
GenomeGCF_040094545Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Faecalibacterium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length226 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 226 aa (82.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa226 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
147-224 aa · 78 aa · 34.5% of protein
Raw token
Trans_reg_C:147:3.94e-32:224:78:77- Raw architecture: Response_reg:5:1.43e-27:113:110:111#Trans_reg_C:147:3.94e-32:224:78:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_040094545::NZ_JBBNHN010000012.1::G00003
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span11508-13235Genomic interval covered by the local TCS group.
Identifiers
Old locus tagAAAU20_11535RefSeq proteinWP_154256068.1
Context group ID
GCF_040094545::NZ_JBBNHN010000012.1::G00003Context members
AAAU20_RS11535AAAU20_RS11540
Partner locus tags
AAAU20_RS11535AAAU20_RS11540
Partner old locus tags
AAAU20_11530AAAU20_11535
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_154256068.1Primary protein accession used for annex mappings.
UniProt accessionA0ABV1BPQ5Primary UniProt accession resolved in the annex database.
UniProt IDA0ABV1BPQ5_9FIRMDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAAAU20_RS11540Primary locus identifier stored in the genes table.
Old locus tagAAAU20_11535Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JBBNHN010000012.1Sequence record reported by the local genomic context database.
Genomic interval12 555-13 235 nt681 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span11 508-13 235 ntGCF_040094545::NZ_JBBNHN010000012.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_040094545::NZ_JBBNHN010000012.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBBNHN010000012.1All displayed genes belong to this local TCS context.
Neighborhood span11 508-13 235 nt1 728 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
11 508 nt13 235 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
AAAU20_RS11535GCF_040094545#AAAU20_RS11535
HKClassic
11 508-12 545 nt · Reverse (-)
AAAU20_RS11540GCF_040094545#AAAU20_RS11540
RROmpRCurrent focus
12 555-13 235 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_009679665#GKG34_RS09245Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1426045
Simplified PFAM architecture for RROC_1426045
PFAM domain coverage: 182 / 226 aa (80.5%)
1 aa226 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-112] | Trans_reg_C[150-223]
- Domain count: 2
- Matched identifier: RROC_1426045
- Positioned domains: Response_reg 5-112 ; Response_reg 5-112 ; Trans_reg_C 150-223 ; Trans_reg_C 150-223
Cluster members and taxonomy
Representative gene: GCF_009679665#GKG34_RS09245
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 853 · GCF_040094545
AssemblyASM4009454v1 · Contighaploid
Genome composition3 245 101 bp · 56,0% GCFaecalibacterium prausnitzii
Signal transduction countsGenes 54 · HK 26 · RR 27CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusFaecalibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Faecalibacterium
Related genes
Preview from the same derived genome key