1 HAMP#1
39-111 aa · 73 aa · 21.2% of protein
Raw token
HAMP:39:0.0000592:111:73:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AAAU20_RS11535
Histidine kinase, Classic
Faecalibacterium prausnitzii · GCF_040094545
ClassHKTypeClassicLength345 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_040094545#AAAU20_RS11535Stable P2CS identifier used across views.
GenomeGCF_040094545Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Faecalibacterium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length345 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage245 / 345 aa (71.0%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa345 aa
Domain-by-domain annotation3 items
2 HisKA#2
127-188 aa · 62 aa · 18.0% of protein
Raw token
HisKA:127:0.0000000000034:188:62:643 HATPase_c#3
234-343 aa · 110 aa · 31.9% of protein
Raw token
HATPase_c:234:3.3e-33:343:110:109- Raw architecture: HAMP:39:0.0000592:111:73:69#HisKA:127:0.0000000000034:188:62:64#HATPase_c:234:3.3e-33:343:110:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_040094545::NZ_JBBNHN010000012.1::G00003
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span11508-13235Genomic interval covered by the local TCS group.
Identifiers
Old locus tagAAAU20_11530RefSeq proteinWP_154256069.1
Context group ID
GCF_040094545::NZ_JBBNHN010000012.1::G00003Context members
AAAU20_RS11535AAAU20_RS11540
Partner locus tags
AAAU20_RS11535AAAU20_RS11540
Partner old locus tags
AAAU20_11530AAAU20_11535
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_154256069.1Primary protein accession used for annex mappings.
UniProt accessionA0ABV1BMW8Primary UniProt accession resolved in the annex database.
UniProt IDA0ABV1BMW8_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAAAU20_RS11535Primary locus identifier stored in the genes table.
Old locus tagAAAU20_11530Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JBBNHN010000012.1Sequence record reported by the local genomic context database.
Genomic interval11 508-12 545 nt1 038 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span11 508-13 235 ntGCF_040094545::NZ_JBBNHN010000012.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_040094545::NZ_JBBNHN010000012.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBBNHN010000012.1All displayed genes belong to this local TCS context.
Neighborhood span11 508-13 235 nt1 728 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
11 508 nt13 235 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
AAAU20_RS11535GCF_040094545#AAAU20_RS11535
HKClassicCurrent focus
11 508-12 545 nt · Reverse (-)
AAAU20_RS11540GCF_040094545#AAAU20_RS11540
RROmpR
12 555-13 235 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_009679665#GKG34_RS09250Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2820283
Simplified PFAM architecture for HKOC_2820283
PFAM domain coverage: 173 / 345 aa (50.1%)
1 aa345 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[125-188] | HATPase_c[234-342]
- Domain count: 2
- Matched identifier: HKOC_2820283
- Positioned domains: HisKA 125-188 ; HATPase_c 234-342
Cluster members and taxonomy
Representative gene: GCF_009679665#GKG34_RS09250
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 853 · GCF_040094545
AssemblyASM4009454v1 · Contighaploid
Genome composition3 245 101 bp · 56,0% GCFaecalibacterium prausnitzii
Signal transduction countsGenes 54 · HK 26 · RR 27CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusFaecalibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Faecalibacterium
Related genes
Preview from the same derived genome key