1 Response_reg#1
5-110 aa · 106 aa · 44.2% of protein
Raw token
Response_reg:5:7.07e-16:110:108:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AAAU20_RS04380
Response regulator LytTR family
Faecalibacterium prausnitzii · GCF_040094545
ClassRRTypeLytTRLength240 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_040094545#AAAU20_RS04380Stable P2CS identifier used across views.
GenomeGCF_040094545Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Faecalibacterium
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length240 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage184 / 240 aa (76.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa240 aa
Domain-by-domain annotation2 items
2 LytTR#2
138-215 aa · 78 aa · 32.5% of protein
Raw token
LytTR:138:0.00000000000195:215:83:98- Raw architecture: Response_reg:5:7.07e-16:110:108:111#LytTR:138:0.00000000000195:215:83:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_040094545::NZ_JBBNHN010000002.1::G00016
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span121313-122035Genomic interval covered by the local TCS group.
Identifiers
Old locus tagAAAU20_04375RefSeq proteinWP_173014772.1
Context group ID
GCF_040094545::NZ_JBBNHN010000002.1::G00016Context members
AAAU20_RS04380
Partner locus tags
AAAU20_RS04380
Partner old locus tags
AAAU20_04375
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_173014772.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAAAU20_RS04380Primary locus identifier stored in the genes table.
Old locus tagAAAU20_04375Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JBBNHN010000002.1Sequence record reported by the local genomic context database.
Genomic interval121 313-122 035 nt723 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span121 313-122 035 ntGCF_040094545::NZ_JBBNHN010000002.1::G00016
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_040094545::NZ_JBBNHN010000002.1::G00016Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBBNHN010000002.1All displayed genes belong to this local TCS context.
Neighborhood span121 313-122 035 nt723 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
121 313 nt122 035 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
AAAU20_RS04380GCF_040094545#AAAU20_RS04380
RRLytTRCurrent focus
121 313-122 035 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002549945#CGS56_RS11335Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0886963
Simplified PFAM architecture for RROC_0886963
PFAM domain coverage: 173 / 240 aa (72.1%)
1 aa240 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[5-112] | LytTR[137-201]
- Domain count: 2
- Matched identifier: RROC_0886963
- Positioned domains: Response_reg 5-112 ; Response_reg 5-112 ; LytTR 137-201 ; LytTR 137-201
Cluster members and taxonomy
Representative gene: GCF_002549945#CGS56_RS11335
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 853 · GCF_040094545
AssemblyASM4009454v1 · Contighaploid
Genome composition3 245 101 bp · 56,0% GCFaecalibacterium prausnitzii
Signal transduction countsGenes 54 · HK 26 · RR 27CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusFaecalibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Faecalibacterium
Related genes
Preview from the same derived genome key