1 GAF_3#1
221-344 aa · 124 aa · 20.9% of protein
Raw token
GAF_3:221:0.00000125:344:130:129P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AAAU20_RS03475
Histidine kinase, Classic
Faecalibacterium prausnitzii · GCF_040094545
ClassHKTypeClassicLength592 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_040094545#AAAU20_RS03475Stable P2CS identifier used across views.
GenomeGCF_040094545Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Faecalibacterium
Domain signature
Compact overview inferred from the domain field
GAF_3HisKAHATPase_c
Protein length592 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage301 / 592 aa (50.8%)Merged over positioned domains only.
Domain description1 GAF_3,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa592 aa
Domain-by-domain annotation3 items
2 HisKA#2
364-431 aa · 68 aa · 11.5% of protein
Raw token
HisKA:364:0.0000000000112:431:68:643 HATPase_c#3
476-584 aa · 109 aa · 18.4% of protein
Raw token
HATPase_c:476:7.88e-28:584:109:109- Raw architecture: GAF_3:221:0.00000125:344:130:129#HisKA:364:0.0000000000112:431:68:64#HATPase_c:476:7.88e-28:584:109:109
- Domain description: 1 GAF_3,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_040094545::NZ_JBBNHN010000001.1::G00011
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span617819-620300Genomic interval covered by the local TCS group.
Identifiers
Old locus tagAAAU20_03475RefSeq proteinWP_349150670.1
Context group ID
GCF_040094545::NZ_JBBNHN010000001.1::G00011Context members
AAAU20_RS03470AAAU20_RS03475
Partner locus tags
AAAU20_RS03470AAAU20_RS03475
Partner old locus tags
AAAU20_03470AAAU20_03475
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_349150670.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAAAU20_RS03475Primary locus identifier stored in the genes table.
Old locus tagAAAU20_03475Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JBBNHN010000001.1Sequence record reported by the local genomic context database.
Genomic interval618 522-620 300 nt1 779 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span617 819-620 300 ntGCF_040094545::NZ_JBBNHN010000001.1::G00011
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_040094545::NZ_JBBNHN010000001.1::G00011Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBBNHN010000001.1All displayed genes belong to this local TCS context.
Neighborhood span617 819-620 300 nt2 482 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
617 819 nt620 300 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
AAAU20_RS03470GCF_040094545#AAAU20_RS03470
RROmpR
617 819-618 529 nt · Reverse (-)
AAAU20_RS03475GCF_040094545#AAAU20_RS03475
HKClassicCurrent focus
618 522-620 300 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_040094545#AAAU20_RS03475The current gene is the representative for this cluster.
PFAM architectureDUF4118 + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1103813
Simplified PFAM architecture for HKOC_1103813
PFAM domain coverage: 285 / 592 aa (48.1%)
1 aa592 aa
DUF4118HisKAHATPase_c
- Simplified architecture: DUF4118 + HisKA + HATPase_c
- Raw architecture: DUF4118[95-201] | HisKA[364-431] | HATPase_c[476-585]
- Domain count: 3
- Matched identifier: HKOC_1103813
- Positioned domains: DUF4118 95-201 ; HisKA 364-431 ; HATPase_c 476-585
Cluster members and taxonomy
Representative gene: GCF_040094545#AAAU20_RS03475
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 853 · GCF_040094545
AssemblyASM4009454v1 · Contighaploid
Genome composition3 245 101 bp · 56,0% GCFaecalibacterium prausnitzii
Signal transduction countsGenes 54 · HK 26 · RR 27CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusFaecalibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Faecalibacterium
Related genes
Preview from the same derived genome key