1 Response_reg#1
10-123 aa · 114 aa · 50.4% of protein
Raw token
Response_reg:10:2.72e-18:123:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AAAV45_RS07565
Response regulator NarL family
Bifidobacterium adolescentis · GCF_040093485
ClassRRTypeNarLLength226 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_040093485#AAAV45_RS07565Stable P2CS identifier used across views.
GenomeGCF_040093485Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length226 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage172 / 226 aa (76.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa226 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
163-220 aa · 58 aa · 25.7% of protein
Raw token
HTH_LUXR:163:2.72e-25:220:58:58- Raw architecture: Response_reg:10:2.72e-18:123:114:111#HTH_LUXR:163:2.72e-25:220:58:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_040093485::NZ_JBBNJN010000054.1::G00003
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span47885-48565Genomic interval covered by the local TCS group.
Identifiers
Old locus tagAAAV45_07570RefSeq proteinWP_124917078.1
Context group ID
GCF_040093485::NZ_JBBNJN010000054.1::G00003Context members
AAAV45_RS07565
Partner locus tags
AAAV45_RS07565
Partner old locus tags
AAAV45_07570
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_124917078.1Primary protein accession used for annex mappings.
UniProt accessionA0A6L4KT84Primary UniProt accession resolved in the annex database.
UniProt IDA0A6L4KT84_BIFADDisplay identifier provided by UniProt.
GO / PubMed3 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAAAV45_RS07565Primary locus identifier stored in the genes table.
Old locus tagAAAV45_07570Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JBBNJN010000054.1Sequence record reported by the local genomic context database.
Genomic interval47 885-48 565 nt681 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span47 885-48 565 ntGCF_040093485::NZ_JBBNJN010000054.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_040093485::NZ_JBBNJN010000054.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBBNJN010000054.1All displayed genes belong to this local TCS context.
Neighborhood span47 885-48 565 nt681 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
47 885 nt48 565 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
AAAV45_RS07565GCF_040093485#AAAV45_RS07565
RRNarLCurrent focus
47 885-48 565 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003856735#CV760_RS02030Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1422312
Simplified PFAM architecture for RROC_1422312
PFAM domain coverage: 169 / 226 aa (74.8%)
1 aa226 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[10-122] | GerE[165-220]
- Domain count: 2
- Matched identifier: RROC_1422312
- Positioned domains: Response_reg 10-122 ; Response_reg 10-122 ; GerE 165-220 ; GerE 165-220
Cluster members and taxonomy
Representative gene: GCF_003856735#CV760_RS02030
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 680 · GCF_040093485
AssemblyASM4009348v1 · Contighaploid
Genome composition2 236 155 bp · 59,5% GCBifidobacterium adolescentis
Signal transduction countsGenes 24 · HK 11 · RR 13CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key