1 HisKA#1
13-45 aa · 33 aa · 11.3% of protein
Raw token
HisKA:13:0.0000312:45:33:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AAAY81_RS05575
Histidine kinase, Classic
Bifidobacterium longum · GCF_040091915
ClassHKTypeClassicLength292 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_040091915#AAAY81_RS05575Stable P2CS identifier used across views.
GenomeGCF_040091915Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length292 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage181 / 292 aa (62.0%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa292 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
109-256 aa · 148 aa · 50.7% of protein
Raw token
HATPase_c:109:8e-22:256:148:109- Raw architecture: HisKA:13:0.0000312:45:33:64#HATPase_c:109:8e-22:256:148:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_040091915::NZ_JBBNMV010000005.1::G00008
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span178381-179259Genomic interval covered by the local TCS group.
Identifiers
Old locus tagAAAY81_05575RefSeq proteinWP_349047638.1
Context group ID
GCF_040091915::NZ_JBBNMV010000005.1::G00008Context members
AAAY81_RS05575
Partner locus tags
AAAY81_RS05575
Partner old locus tags
AAAY81_05575
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_349047638.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAAAY81_RS05575Primary locus identifier stored in the genes table.
Old locus tagAAAY81_05575Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JBBNMV010000005.1Sequence record reported by the local genomic context database.
Genomic interval178 381-179 259 nt879 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span178 381-179 259 ntGCF_040091915::NZ_JBBNMV010000005.1::G00008
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_040091915::NZ_JBBNMV010000005.1::G00008Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBBNMV010000005.1All displayed genes belong to this local TCS context.
Neighborhood span178 381-179 259 nt879 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
178 381 nt179 259 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
AAAY81_RS05575GCF_040091915#AAAY81_RS05575
HKClassicCurrent focus
178 381-179 259 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_040091915#AAAY81_RS05575The current gene is the representative for this cluster.
PFAM architectureHATPase_c1 domain in the representative PFAM annotation.
PFAM architecture for HKOC_2894620
Simplified PFAM architecture for HKOC_2894620
PFAM domain coverage: 147 / 292 aa (50.3%)
1 aa292 aa
HATPase_c
- Simplified architecture: HATPase_c
- Raw architecture: HATPase_c[109-255]
- Domain count: 1
- Matched identifier: HKOC_2894620
- Positioned domains: HATPase_c 109-255
Cluster members and taxonomy
Representative gene: GCF_040091915#AAAY81_RS05575
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 216 816 · GCF_040091915
AssemblyASM4009191v1 · Contighaploid
Genome composition2 378 941 bp · 60,0% GCBifidobacterium longum
Signal transduction countsGenes 23 · HK 11 · RR 10CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key