1 HAMP#1
59-128 aa · 70 aa · 16.9% of protein
Raw token
HAMP:59:1.29e-16:128:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AAA019_RS09860
Histidine kinase, Classic
Bifidobacterium longum · GCF_040091855
ClassHKTypeClassicLength415 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_040091855#AAA019_RS09860Stable P2CS identifier used across views.
GenomeGCF_040091855Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length415 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage248 / 415 aa (59.8%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa415 aa
Domain-by-domain annotation3 items
2 HisKA#2
140-206 aa · 67 aa · 16.1% of protein
Raw token
HisKA:140:0.0000000000000173:206:67:643 HATPase_c#3
253-363 aa · 111 aa · 26.7% of protein
Raw token
HATPase_c:253:4.47e-30:363:111:109- Raw architecture: HAMP:59:1.29e-16:128:70:69#HisKA:140:0.0000000000000173:206:67:64#HATPase_c:253:4.47e-30:363:111:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_040091855::NZ_JBBNMU010000178.1::G00004
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span1-1248Genomic interval covered by the local TCS group.
Identifiers
Old locus tagAAA019_09865RefSeq proteinWP_349047298.1
Context group ID
GCF_040091855::NZ_JBBNMU010000178.1::G00004Context members
AAA019_RS09860
Partner locus tags
AAA019_RS09860
Partner old locus tags
AAA019_09865
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_349047298.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAAA019_RS09860Primary locus identifier stored in the genes table.
Old locus tagAAA019_09865Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JBBNMU010000178.1Sequence record reported by the local genomic context database.
Genomic interval1-1 248 nt1 248 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1-1 248 ntGCF_040091855::NZ_JBBNMU010000178.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_040091855::NZ_JBBNMU010000178.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBBNMU010000178.1All displayed genes belong to this local TCS context.
Neighborhood span1-1 248 nt1 248 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 nt1 248 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
AAA019_RS09860GCF_040091855#AAA019_RS09860
HKClassicCurrent focus
1-1 248 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_040091855#AAA019_RS09860The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2315779
Simplified PFAM architecture for HKOC_2315779
PFAM domain coverage: 230 / 415 aa (55.4%)
1 aa415 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[76-128] | HisKA[140-206] | HATPase_c[253-362]
- Domain count: 3
- Matched identifier: HKOC_2315779
- Positioned domains: HAMP 76-128 ; HisKA 140-206 ; HATPase_c 253-362
Cluster members and taxonomy
Representative gene: GCF_040091855#AAA019_RS09860
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 216 816 · GCF_040091855
AssemblyASM4009185v1 · Contighaploid
Genome composition2 565 896 bp · 59,5% GCBifidobacterium longum
Signal transduction countsGenes 22 · HK 10 · RR 11CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key