1 Response_reg#1
1-82 aa · 82 aa · 41.0% of protein
Raw token
Response_reg:1:5.93e-27:82:83:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AAA019_RS07690
Response regulator OmpR family
Bifidobacterium longum · GCF_040091855
ClassRRTypeOmpRLength200 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_040091855#AAA019_RS07690Stable P2CS identifier used across views.
GenomeGCF_040091855Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length200 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage154 / 200 aa (77.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa200 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
124-195 aa · 72 aa · 36.0% of protein
Raw token
Trans_reg_C:124:5.13e-31:195:77:77- Raw architecture: Response_reg:1:5.93e-27:82:83:111#Trans_reg_C:124:5.13e-31:195:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_040091855::NZ_JBBNMU010000108.1::G00001
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1-1678Genomic interval covered by the local TCS group.
Identifiers
Old locus tagAAA019_07690RefSeq proteinWP_349047183.1
Context group ID
GCF_040091855::NZ_JBBNMU010000108.1::G00001Context members
AAA019_RS07690AAA019_RS07695
Partner locus tags
AAA019_RS07690AAA019_RS07695
Partner old locus tags
AAA019_07690AAA019_07695
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_349047183.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAAA019_RS07690Primary locus identifier stored in the genes table.
Old locus tagAAA019_07690Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JBBNMU010000108.1Sequence record reported by the local genomic context database.
Genomic interval1-605 nt605 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1-1 678 ntGCF_040091855::NZ_JBBNMU010000108.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_040091855::NZ_JBBNMU010000108.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBBNMU010000108.1All displayed genes belong to this local TCS context.
Neighborhood span1-1 678 nt1 678 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 nt1 678 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
AAA019_RS07690GCF_040091855#AAA019_RS07690
RROmpRCurrent focus
1-605 nt · Forward (+)
AAA019_RS07695GCF_040091855#AAA019_RS07695
HKClassic
605-1 678 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_040091855#AAA019_RS07690The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_2141441
Simplified PFAM architecture for RROC_2141441
PFAM domain coverage: 153 / 200 aa (76.5%)
1 aa200 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[2-82] | Trans_reg_C[124-195]
- Domain count: 2
- Matched identifier: RROC_2141441
- Positioned domains: Response_reg 2-82 ; Trans_reg_C 124-195
Cluster members and taxonomy
Representative gene: GCF_040091855#AAA019_RS07690
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 216 816 · GCF_040091855
AssemblyASM4009185v1 · Contighaploid
Genome composition2 565 896 bp · 59,5% GCBifidobacterium longum
Signal transduction countsGenes 22 · HK 10 · RR 11CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key