1 Response_reg#1
4-113 aa · 110 aa · 21.5% of protein
Raw token
Response_reg:4:9.22e-30:113:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
MYD04_RS15415
Response regulator, unclassified
Mediterraneibacter gnavus · GCF_040084835
ClassRRTypeunclassifiedLength512 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_040084835#MYD04_RS15415Stable P2CS identifier used across views.
GenomeGCF_040084835Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length512 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage184 / 512 aa (35.9%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa512 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
408-449 aa · 42 aa · 8.2% of protein
Raw token
HTH_AraC:408:0.0000000288:449:42:423 HTH_AraC#3
463-494 aa · 32 aa · 6.3% of protein
Raw token
HTH_AraC:463:0.000000165:494:32:42- Raw architecture: Response_reg:4:9.22e-30:113:110:111#HTH_AraC:408:0.0000000288:449:42:42#HTH_AraC:463:0.000000165:494:32:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_040084835::NZ_JALQCN010000006.1::G00041
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span3049429-3052654Genomic interval covered by the local TCS group.
Identifiers
Old locus tagMYD04_15440RefSeq proteinWP_349011610.1
Context group ID
GCF_040084835::NZ_JALQCN010000006.1::G00041Context members
MYD04_RS15415MYD04_RS15420
Partner locus tags
MYD04_RS15415MYD04_RS15420
Partner old locus tags
MYD04_15440MYD04_15445
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_349011610.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagMYD04_RS15415Primary locus identifier stored in the genes table.
Old locus tagMYD04_15440Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JALQCN010000006.1Sequence record reported by the local genomic context database.
Genomic interval3 049 429-3 050 967 nt1 539 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span3 049 429-3 052 654 ntGCF_040084835::NZ_JALQCN010000006.1::G00041
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_040084835::NZ_JALQCN010000006.1::G00041Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JALQCN010000006.1All displayed genes belong to this local TCS context.
Neighborhood span3 049 429-3 052 654 nt3 226 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
3 049 429 nt3 052 654 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
MYD04_RS15415GCF_040084835#MYD04_RS15415
RRunclassifiedCurrent focus
3 049 429-3 050 967 nt · Forward (+)
MYD04_RS15420GCF_040084835#MYD04_RS15420
HKClassic
3 050 939-3 052 654 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_040084835#MYD04_RS15415The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0144415
Simplified PFAM architecture for RROC_0144415
PFAM domain coverage: 189 / 512 aa (36.9%)
1 aa512 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[4-113] | HTH_18[421-499]
- Domain count: 2
- Matched identifier: RROC_0144415
- Positioned domains: Response_reg 4-113 ; HTH_18 421-499
Cluster members and taxonomy
Representative gene: GCF_040084835#MYD04_RS15415
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_040084835
AssemblyASM4008483v1 · Contighaploid
Genome composition3 458 840 bp · 42,5% GCMediterraneibacter gnavus
Signal transduction countsGenes 86 · HK 42 · RR 44CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key