1 Response_reg#1
6-115 aa · 110 aa · 47.4% of protein
Raw token
Response_reg:6:1.13e-35:115:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
MYD04_RS15340
Response regulator OmpR family
Mediterraneibacter gnavus · GCF_040084835
ClassRRTypeOmpRLength232 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_040084835#MYD04_RS15340Stable P2CS identifier used across views.
GenomeGCF_040084835Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length232 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage186 / 232 aa (80.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa232 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
153-228 aa · 76 aa · 32.8% of protein
Raw token
Trans_reg_C:153:2.56e-30:228:77:77- Raw architecture: Response_reg:6:1.13e-35:115:111:111#Trans_reg_C:153:2.56e-30:228:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_040084835::NZ_JALQCN010000006.1::G00040
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span3034858-3037714Genomic interval covered by the local TCS group.
Identifiers
Old locus tagMYD04_15365RefSeq proteinWP_004843941.1
Context group ID
GCF_040084835::NZ_JALQCN010000006.1::G00040Context members
MYD04_RS15340MYD04_RS15345
Partner locus tags
MYD04_RS15340MYD04_RS15345
Partner old locus tags
MYD04_15365MYD04_15370
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_004843941.1Primary protein accession used for annex mappings.
UniProt accessionA7B5U9Primary UniProt accession resolved in the annex database.
UniProt IDA7B5U9_MEDG7Display identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagMYD04_RS15340Primary locus identifier stored in the genes table.
Old locus tagMYD04_15365Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JALQCN010000006.1Sequence record reported by the local genomic context database.
Genomic interval3 034 858-3 035 556 nt699 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span3 034 858-3 037 714 ntGCF_040084835::NZ_JALQCN010000006.1::G00040
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_040084835::NZ_JALQCN010000006.1::G00040Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JALQCN010000006.1All displayed genes belong to this local TCS context.
Neighborhood span3 034 858-3 037 714 nt2 857 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
3 034 858 nt3 037 714 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
MYD04_RS15340GCF_040084835#MYD04_RS15340
RROmpRCurrent focus
3 034 858-3 035 556 nt · Forward (+)
MYD04_RS15345GCF_040084835#MYD04_RS15345
HKClassic
3 035 528-3 037 714 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_964242535#ACESTQ_RS10050Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1119261
Simplified PFAM architecture for RROC_1119261
PFAM domain coverage: 186 / 233 aa (79.8%)
1 aa233 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-115] | Trans_reg_C[153-228]
- Domain count: 2
- Matched identifier: RROC_1119261
- Positioned domains: Response_reg 6-115 ; Trans_reg_C 153-228
Cluster members and taxonomy
Representative gene: GCF_964242535#ACESTQ_RS10050
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_040084835
AssemblyASM4008483v1 · Contighaploid
Genome composition3 458 840 bp · 42,5% GCMediterraneibacter gnavus
Signal transduction countsGenes 86 · HK 42 · RR 44CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key