1 Response_reg#1
2-105 aa · 104 aa · 44.4% of protein
Raw token
Response_reg:2:2.45e-17:105:106:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
MYD04_RS06895
Response regulator LytTR family
Mediterraneibacter gnavus · GCF_040084835
ClassRRTypeLytTRLength234 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_040084835#MYD04_RS06895Stable P2CS identifier used across views.
GenomeGCF_040084835Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length234 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage194 / 234 aa (82.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa234 aa
Domain-by-domain annotation2 items
2 LytTR#2
134-223 aa · 90 aa · 38.5% of protein
Raw token
LytTR:134:0.00000000000000356:223:95:98- Raw architecture: Response_reg:2:2.45e-17:105:106:111#LytTR:134:0.00000000000000356:223:95:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_040084835::NZ_JALQCN010000006.1::G00018
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span1274990-1275694Genomic interval covered by the local TCS group.
Identifiers
Old locus tagMYD04_06895RefSeq proteinWP_349011197.1
Context group ID
GCF_040084835::NZ_JALQCN010000006.1::G00018Context members
MYD04_RS06895
Partner locus tags
MYD04_RS06895
Partner old locus tags
MYD04_06895
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_349011197.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagMYD04_RS06895Primary locus identifier stored in the genes table.
Old locus tagMYD04_06895Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JALQCN010000006.1Sequence record reported by the local genomic context database.
Genomic interval1 274 990-1 275 694 nt705 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 274 990-1 275 694 ntGCF_040084835::NZ_JALQCN010000006.1::G00018
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_040084835::NZ_JALQCN010000006.1::G00018Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JALQCN010000006.1All displayed genes belong to this local TCS context.
Neighborhood span1 274 990-1 275 694 nt705 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 274 990 nt1 275 694 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
MYD04_RS06895GCF_040084835#MYD04_RS06895
RRLytTRCurrent focus
1 274 990-1 275 694 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_040084855#MYD05_RS02105Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1039638
Simplified PFAM architecture for RROC_1039638
PFAM domain coverage: 191 / 235 aa (81.3%)
1 aa235 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[6-106] | LytTR[135-224]
- Domain count: 2
- Matched identifier: RROC_1039638
- Positioned domains: Response_reg 6-106 ; LytTR 135-224
Cluster members and taxonomy
Representative gene: GCF_040084855#MYD05_RS02105
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_040084835
AssemblyASM4008483v1 · Contighaploid
Genome composition3 458 840 bp · 42,5% GCMediterraneibacter gnavus
Signal transduction countsGenes 86 · HK 42 · RR 44CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key