1 HAMP#1
186-250 aa · 65 aa · 13.5% of protein
Raw token
HAMP:186:0.0000579:250:65:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ABLX66_RS04175
Histidine kinase, Classic
Hungatella hominis · GCF_039946375
ClassHKTypeClassicLength481 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_039946375#ABLX66_RS04175Stable P2CS identifier used across views.
GenomeGCF_039946375Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length481 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage242 / 481 aa (50.3%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa481 aa
Domain-by-domain annotation3 items
2 HisKA#2
254-319 aa · 66 aa · 13.7% of protein
Raw token
HisKA:254:0.000000000000458:319:66:643 HATPase_c#3
368-478 aa · 111 aa · 23.1% of protein
Raw token
HATPase_c:368:3.63e-32:478:111:109- Raw architecture: HAMP:186:0.0000579:250:65:69#HisKA:254:0.000000000000458:319:66:64#HATPase_c:368:3.63e-32:478:111:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_039946375::NZ_JBDOJH010000003.1::G00031
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span197863-199308Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_039946375::NZ_JBDOJH010000003.1::G00031Context members
ABLX66_RS04175
Partner locus tags
ABLX66_RS04175
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002602460.1Primary protein accession used for annex mappings.
UniProt accessionA0ABR7HAZ4Primary UniProt accession resolved in the annex database.
UniProt IDA0ABR7HAZ4_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagABLX66_RS04175Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JBDOJH010000003.1Sequence record reported by the local genomic context database.
Genomic interval197 863-199 308 nt1 446 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span197 863-199 308 ntGCF_039946375::NZ_JBDOJH010000003.1::G00031
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_039946375::NZ_JBDOJH010000003.1::G00031Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBDOJH010000003.1All displayed genes belong to this local TCS context.
Neighborhood span197 863-199 308 nt1 446 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
197 863 nt199 308 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
ABLX66_RS04175GCF_039946375#ABLX66_RS04175
HKClassicCurrent focus
197 863-199 308 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000371445#HMPREF1093_RS13385Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1611667
Simplified PFAM architecture for HKOC_1611667
PFAM domain coverage: 176 / 481 aa (36.6%)
1 aa481 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[255-319] | HATPase_c[368-478]
- Domain count: 2
- Matched identifier: HKOC_1611667
- Positioned domains: HisKA 255-319 ; HATPase_c 368-478
Cluster members and taxonomy
Representative gene: GCF_000371445#HMPREF1093_RS13385
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 763 050 · GCF_039946375
AssemblyASM3994637v1 · Scaffoldhaploid
Genome composition7 382 838 bp · 49,0% GCHungatella hominis
Signal transduction countsGenes 274 · HK 137 · RR 134CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key