1 Response_reg#1
3-119 aa · 117 aa · 49.4% of protein
Raw token
Response_reg:3:2.19e-22:119:119:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ABLX66_RS03980
Response regulator LytTR family
Hungatella hominis · GCF_039946375
ClassRRTypeLytTRLength237 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_039946375#ABLX66_RS03980Stable P2CS identifier used across views.
GenomeGCF_039946375Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length237 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage205 / 237 aa (86.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa237 aa
Domain-by-domain annotation2 items
2 LytTR#2
142-229 aa · 88 aa · 37.1% of protein
Raw token
LytTR:142:2.64e-17:229:94:98- Raw architecture: Response_reg:3:2.19e-22:119:119:111#LytTR:142:2.64e-17:229:94:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_039946375::NZ_JBDOJH010000003.1::G00029
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span153212-153925Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_039946375::NZ_JBDOJH010000003.1::G00029Context members
ABLX66_RS03980
Partner locus tags
ABLX66_RS03980
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117631888.1Primary protein accession used for annex mappings.
UniProt accessionA0A374P538Primary UniProt accession resolved in the annex database.
UniProt IDA0A374P538_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagABLX66_RS03980Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JBDOJH010000003.1Sequence record reported by the local genomic context database.
Genomic interval153 212-153 925 nt714 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span153 212-153 925 ntGCF_039946375::NZ_JBDOJH010000003.1::G00029
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_039946375::NZ_JBDOJH010000003.1::G00029Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBDOJH010000003.1All displayed genes belong to this local TCS context.
Neighborhood span153 212-153 925 nt714 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
153 212 nt153 925 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
ABLX66_RS03980GCF_039946375#ABLX66_RS03980
RRLytTRCurrent focus
153 212-153 925 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003437645#DXC88_RS14085Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0968441
Simplified PFAM architecture for RROC_0968441
PFAM domain coverage: 203 / 237 aa (85.7%)
1 aa237 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[3-118] | LytTR[143-229]
- Domain count: 2
- Matched identifier: RROC_0968441
- Positioned domains: Response_reg 3-118 ; Response_reg 3-118 ; LytTR 143-229 ; LytTR 143-229
Cluster members and taxonomy
Representative gene: GCF_003437645#DXC88_RS14085
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 763 050 · GCF_039946375
AssemblyASM3994637v1 · Scaffoldhaploid
Genome composition7 382 838 bp · 49,0% GCHungatella hominis
Signal transduction countsGenes 274 · HK 137 · RR 134CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key