1 Response_reg#1
4-107 aa · 104 aa · 43.7% of protein
Raw token
Response_reg:4:0.00000000000000125:107:106:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ABLX66_RS03870
Response regulator LytTR family
Hungatella hominis · GCF_039946375
ClassRRTypeLytTRLength238 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_039946375#ABLX66_RS03870Stable P2CS identifier used across views.
GenomeGCF_039946375Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length238 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage192 / 238 aa (80.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa238 aa
Domain-by-domain annotation2 items
2 LytTR#2
141-228 aa · 88 aa · 37.0% of protein
Raw token
LytTR:141:5.37e-18:228:93:98- Raw architecture: Response_reg:4:0.00000000000000125:107:106:111#LytTR:141:5.37e-18:228:93:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_039946375::NZ_JBDOJH010000003.1::G00028
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span123688-124404Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_039946375::NZ_JBDOJH010000003.1::G00028Context members
ABLX66_RS03870
Partner locus tags
ABLX66_RS03870
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117631912.1Primary protein accession used for annex mappings.
UniProt accessionA0A374P524Primary UniProt accession resolved in the annex database.
UniProt IDA0A374P524_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagABLX66_RS03870Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JBDOJH010000003.1Sequence record reported by the local genomic context database.
Genomic interval123 688-124 404 nt717 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span123 688-124 404 ntGCF_039946375::NZ_JBDOJH010000003.1::G00028
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_039946375::NZ_JBDOJH010000003.1::G00028Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBDOJH010000003.1All displayed genes belong to this local TCS context.
Neighborhood span123 688-124 404 nt717 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
123 688 nt124 404 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
ABLX66_RS03870GCF_039946375#ABLX66_RS03870
RRLytTRCurrent focus
123 688-124 404 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003437645#DXC88_RS14200Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0940370
Simplified PFAM architecture for RROC_0940370
PFAM domain coverage: 199 / 238 aa (83.6%)
1 aa238 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[4-111] | LytTR[140-230]
- Domain count: 2
- Matched identifier: RROC_0940370
- Positioned domains: Response_reg 4-111 ; Response_reg 4-111 ; LytTR 140-230 ; LytTR 140-230
Cluster members and taxonomy
Representative gene: GCF_003437645#DXC88_RS14200
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 763 050 · GCF_039946375
AssemblyASM3994637v1 · Scaffoldhaploid
Genome composition7 382 838 bp · 49,0% GCHungatella hominis
Signal transduction countsGenes 274 · HK 137 · RR 134CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key